Commits for cricket

v270_preview to v270_preview2 (2012-07-03 to 2012-07-10) v270

• Adding Tier2.5 and tag changes to caltech with out introducing other changes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.ra - lines changed 160, context: html, text, full: html, text
• Removing numeric tags from the old Affy tracks
  • src/hg/makeDb/trackDb/human/hg16/trackDb.encode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.encodeChip.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.encode.ra - lines changed 129, context: html, text, full: html, text
• Changing the tags on Uchicago to not begin with numerals
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.ra - lines changed 13, context: html, text, full: html, text
• Changing tags and Tier 2 in Cell line for this track, this results in some realphebetization
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra - lines changed 89, context: html, text, full: html, text
• Fixed the two slash N issues
  • src/hg/encode/validateFiles/validateFiles.c - lines changed 2, context: html, text, full: html, text
• Steve asked that we correct the other alphabetization errors
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra - lines changed 1, context: html, text, full: html, text
• Cleaning up the dimA dimB strangeness
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.release3.ra - lines changed 3, context: html, text, full: html, text
• Merge branch 'hg19TagCorrectionCricket'
• Adding the new metaData in for reporting
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 736, context: html, text, full: html, text
• Changing the bedRnaElements to bed 6
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.ra - lines changed 9, context: html, text, full: html, text
• Removing freeze date which is not related to this data
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeReg.ra - lines changed 9, context: html, text, full: html, text
• Adding three links and fixing the Signals to say Plus and Minus
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.release3.html - lines changed 2, context: html, text, full: html, text
• Separating out the mdb files for the REG tracks into separate files and adding a composite object for the RegTxn track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeReg.ra - lines changed 295, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegDnaseClustered.ra - lines changed 37, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegTfbsClustered.ra - lines changed 53, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRegTxn.ra - lines changed 211, context: html, text, full: html, text
• Adding Steves changes from ticket 7990, mostly spelling and grammar
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeReg.release3.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRegTxn.html - lines changed 14, context: html, text, full: html, text