22f9f870631d27d22d4bc5a51dd6b30b026103eb
kuhn
  Fri Jul 6 10:29:27 2012 -0700
added link to original hgTables release announcement in archives
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                          <font size="4"><a name="TOC"></a><b>&nbsp; News</b></font><a href="http://www.twitter.com/GenomeBrowser" target="_blank"><img src="http://twitter-badges.s3.amazonaws.com/t_small-a.png" alt="Follow GenomeBrowser on Twitter" style="vertical-align:text-bottom; margin-left: 15px;"></a></TD>
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                   <P>
                   To receive announcements of new genome 
                   assembly releases, new software features, updates and 
                   training seminars by email, subscribe to the
                   <A HREF="https://lists.soe.ucsc.edu/mailman/listinfo/genome-announce" 
                   TARGET=_blank>genome-announce</A> mailing list.</P>
 
             
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 		<P>
                 <FONT FACE="courier" SIZE="3"><B>06 July 2012 - hgText CGI
                 To Be Retired </B></FONT>
 		</P>
 		<P>We are announcing the imminent retirement of the hgText
                 CGI.  hgText was the original version of the Table Browser,
-                and was replaced by the new CGI, hgTables, in 2004.   A very
+                and was replaced by the new CGI, hgTables, in <A HREF = 
+                "goldenPath/newsarch.html#100104">2004</A>.   A very
                 small number of our users are still accessing the database
                 using the old hgText CGI.  Beginning July 24, 2012, we will
                 be removing the hgText CGI from our site.  All users will need
                 to use hgTables after that time.  </P>
 
                 <HR>
 		    
 		<P>
                 <FONT FACE="courier" SIZE="3"><B>19 June 2012 - Many New
 		Assemblies Available in the Browser! </B></FONT>
 		</P>
 		<P>
 		With the abundance of new vertebrate assemblies available in 
 		GenBank, the UCSC Genome Browser team has streamlined its 
 		browser release pipeline in the effort to keep pace. In the past
 		week we have released a new browser on the Western painted 
 		turtle and updated assemblies for the cow, rat, and chicken. 
 		Browsers for the lesser hedgehog tenrec and the latest dog
 		assembly should be available later this week, for a total of 18 
 		assemblies released in the past half year. You can 
 		expect many new assemblies to show up on our website in upcoming
 		months, along with broader multiple alignment annotations on 
 		selected organisms that include many of the new assemblies.</P>
 		<P>
 		Keep in mind that some of these new assemblies may not yet be 
 		fully populated with annotation tracks. Some data, such as the 
 		data underlying genes and SNPs tracks, may not be immediately 
 		available, and other annotations (e.g., comparative genomics 
 		tracks) may take a while to generate. As always, our mandated 
 		focus is on vertebrates, with a particular emphasis on richly 
 		annotating the human genome, although we do provide occasional 
 		updated assemblies for other selected model organisms (fly, 
 		worm, yeast).</P>
 		<P>
 		We regret that we don't have the resources to support the many 
 		other genomics research communities who would like us to 
 		visualize their data in our browser, but we can provide you 
 		with information for setting up your own browser or track hub 
 		to display your data, as well as links to other visualization 
 		resources on the web that are specific to your genome of 
 		interest. Feel free to <A HREF="contacts.html">contact us</A>
 		for more information.</P>
 		<P>
 		Newly released assemblies:
 		<UL>
 		<LI><B>Cow</B> (<em>Bos taurus</em>) <B>bosTau7</B> &ndash; 
 		Btau_4.6.1 (Oct. 2011) from the Bovine Genome Sequencing 
 		Consortium and Baylor College of Medicine
 		<LI><B>Rat</B> (<em>Rattus norvegicus</em>) <B>rn5</B> &ndash; 
 		RGSC Rnor_5.0 (Oct. 2011) from the Rat Genome Sequencing 
 		Consortium
 		<LI><B>Chicken</B> (<em>Gallus gallus</em>) <B>galGal4</B> 
 		&ndash; Gallus_gallus-4.0 (Nov. 2011) from the International 
 		Chicken Genome Consortium
 		<LI><B>Western painted turtle</B> (<em>Chrysemys picta bellii</em>) 
 		<B>chrPic1</B> &ndash; Chrysemys_picta_bellii-3.0.1 (Dec. 2011) 
 		from the International Painted Turtle Genome Sequencing Consortium
 		<LI><B>Lesser hedgehog tenrec</B> (<em>Echinops telfairi</em>) 
 		<B>echTel1</B> &ndash; echTel1 (Jul. 2005) from the Broad 
 		Institute (pending)
 		<LI><B>Dog</B> (<em>Canis familiaris</em>) <B>canFam3</B> 
 		&ndash; v3.1 (Sep. 2011) from the Broad Institute (pending)
 		</UL>
 
 		Released in the past half year:
 		<UL>
 		<LI><B>Mouse</B> (<em>Mus musculus</em>) <B>mm10</B> &ndash; 
 		GRCm38 (Dec. 2011) from the Mouse Genome Reference Consortium
 		<LI><B>Cow</B> (<em>Bos taurus</em>) <B>bosTau6</B> &ndash; 
 		Bos_taurus_UMD_3.1 (Nov. 2009) from the University of Maryland
 		<LI><B>Fugu</B> (<em>Takifugu rubripes</em>) <B>fr3</B> &ndash; 
 		FUGU5 (Oct. 2011) from the International Fugu Genome Sequencing 
 		Consortium
 		<LI><B>Gibbon</B> (<em>Nomascus leucogenys</em>) <B>nomLeu1</B> 
 		&ndash; Nleu1.0 (Jan. 2010) from the Gibbon Genome Sequencing 
 		Consortium
 		<LI><B>Gorilla</B> (<em>Gorilla gorilla gorilla</em>) <B>gorGor3</B> 
 		&ndash; gorGor3.1 (May 2011) from the Wellcome Trust Sanger 
 		Institute
 		<LI><B>Microbat</B> (<em>Myotis lucifugus</em>) <B>myoLuc2</B> 
 		&ndash; Myoluc2.0 (Jul. 2010) from the Broad Institute
 		<LI><B>Naked mole-rat</B> (<em>Heterocephalus glaber</em>)
 		<B>hetGla1</B> &ndash; HetGla_1.0 (Jul. 2011) from the Beijing 
 		Genomics Institute
 		<LI><B>Tammar wallaby</B> (<em>Macropus eugenii</em>) <B>macEug2</B> 
 		&ndash; Meug_1.1 (Sep. 2009) from the Tammar Wallaby Genome 
 		Sequencing Consortium
 		<LI><B>Turkey</B> (<em>Meleagris gallopavo</em>) <B>melGal1</B> 
 		&ndash; Turkey_2.01 (Dec. 2009) from the Turkey Genome Consortium
 		<LI><B>Western clawed frog</B> (<em>X. tropicalis</em>)
 		<B>xenTro3</B> &ndash; v4.2 (Nov.  2009) from the DOE Joint 
 		Genome Institute
 		<LI><B><em>C. elegans</em></B> <B>ce10</B> &ndash; WS220 
 		(Oct. 2010) from WormBase
 		<LI><B><em>S. cerevisiae</em></B> <B>sacCer3</B> &ndash; 
 		SacCer_Apr2011 (Apr. 2011) from the Saccharomyces Genome Database
 		</UL> </P>
 		<P>
 		Bulk downloads of the sequence and annotation data for these
 		assemblies are available via the Genome Browser 
 		<A HREF="ftp://hgdownload.cse.ucsc.edu/goldenPath/" 
 		TARGET=_blank>FTP server</A> or the 
 		<A HREF="http://hgdownload.cse.ucsc.edu/downloads.html" 
 		TARGET=_blank>Downloads</A> page. Be sure to check the 
 		<A HREF="goldenPath/credits.html" TARGET=_blank>credits</A> 
 		page for data use restrictions and acknowledgments.  </P>
 		<P>
 		Many thanks to the sequencing and assembly groups, as well as 
 		NCBI's GenBank, for making these genomes available for public 
 		use. We'd also like to acknowledge Hiram Clawson, Chin Li, and 
 		our hard-working QA team for putting together these browsers.  </P>
         	<HR>
 
 	   <!-- start archives -->
 		<P>
         	<font face="courier" size="3"><b> 15 May 2012 - New Fugu (fr3) 
 		Assembly Now Available in the Genome Browser: </b></font>
                 We are pleased to announce the release of a Genome Browser 
 		for the October 2011 assembly of the Fugu, <i>Takifugu rubripes</i>
 		(JGI v5.0, UCSC version fr3). 
 		<A HREF="goldenPath/newsarch.html#051512b">Read more</A>.
 		</P>
 		<P>
 ==> <a href="goldenPath/newsarch.html">News Archives</a>
 
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