981ef07d25e4560559dae28d3e316913569944d7
tdreszer
  Fri Jul 6 17:51:06 2012 -0700
Next batch of many checkins as dictated by Jim.  Formatting space after if and limiting lines to 100 chars.  Changes limited to lines last touched by tdreszer (git blame) so as not to ruin history.  None of these changes should affect executables in any way.
diff --git src/hg/lib/trackDbCustom.c src/hg/lib/trackDbCustom.c
index c7d8fc7..5ec0bfa 100644
--- src/hg/lib/trackDbCustom.c
+++ src/hg/lib/trackDbCustom.c
@@ -447,32 +447,32 @@
 {
 struct trackDb *generation;
 struct slName *slFoundVars = NULL;
 for (generation = tdb; generation != NULL; generation = generation->parent)
     {
     struct slName *slFoundHere = trackDbLocalSettingsWildMatch(generation,expression);
     if (slFoundHere != NULL)
         {
         if (slFoundVars == NULL)
             slFoundVars = slFoundHere;
         else
             {
             struct slName *one = NULL;
             while ((one = slPopHead(&slFoundHere)) != NULL)
                 {
-                slNameStore(&slFoundVars, one->name); // Will only store if it is not already found!  This means closest to home will work
-                slNameFree(&one);
+                slNameStore(&slFoundVars, one->name); // Will only store if it is not already found!
+                slNameFree(&one);                     // This means closest to home will work
                 }
             }
         }
     }
 if (slFoundVars != NULL)
     slNameSort(&slFoundVars);
 
 return slFoundVars;
 }
 
 boolean trackDbSettingOn(struct trackDb *tdb, char *name)
 /* Return true if a tdb setting is "on" "true" or "enabled". */
 {
 char *setting = trackDbSetting(tdb,name);
 return  (setting && (   sameWord(setting,"on")
@@ -695,31 +695,31 @@
     cType = cfgWig;
 else if(startsWith("bedGraph", type))
     cType = cfgWig;
 else if(startsWith("netAlign", type)
      || startsWith("net", tdb->track)) // SPECIAL CASE from hgTrackUi which might not be needed
     cType = cfgNetAlign;
 else if(sameWord("bed5FloatScore",       type)
      || sameWord("bed5FloatScoreWithFdr",type))
     {
     if (bedScoreHasCfgUi(tdb))
         cType = cfgBedScore;
     }
 else if(encodePeakHasCfgUi(tdb))
     cType = cfgPeak;
 else if(startsWithWord("genePred",type)
-     && !startsWith("encodeGencodeRaceFrags", tdb->track))  // SPECIAL CASE should be handled in trackDb!
+     && !startsWith("encodeGencodeRaceFrags", tdb->track)) // SPECIAL CASE should fix in trackDb!
     cType = cfgGenePred;
 else if(sameWord("bedLogR",type)
      || sameWord("peptideMapping", type))
     cType = cfgBedScore;
 else if(startsWith("bed ", type) || startsWith("bigBed", type))
     {
     if (trackDbSetting(tdb, "bedFilter") != NULL)
            cType = cfgBedFilt;
     else
 	{
 	char *words[3];
 	int wordCount = chopLine(cloneString( type), words);
 	if ((((wordCount > 1) && (atoi(words[1]) >= 5)) || 
 	    trackDbSetting(tdb, "scoreMin") != NULL)
 		&& 
@@ -883,33 +883,33 @@
 assert(tdbChild != NULL);
 struct trackDb *tdb = tdbChild;
 struct sqlConnection *conn = NULL;
 for (;tdb->parent != NULL;tdb = tdb->parent)
     ; // advance to highest parent already known
 
 // If track with no tdbParent has a parent setting then fill it in.
 for (;tdb->parent == NULL; tdb = tdb->parent)
     {
     char *parentTrack = trackDbLocalSetting(tdb,"parent");
     if (parentTrack == NULL)
         break;
 
     if (conn == NULL)
         conn = hAllocConn(db);
-    tdb->parent = hMaybeTrackInfo(conn, parentTrack); // Now there are 2 versions of this child!  And what to do about views?
+    // Now there are 2 versions of this child!  And what to do about views?
+    tdb->parent = hMaybeTrackInfo(conn, parentTrack);
     printf("tdbFillInAncestry(%s): has %d children.",parentTrack,slCount(tdb->parent->subtracks));
-    //tdb->parent = tdbFindOrCreate(db,tdb,parentTrack); // Now there are 2 versions of this child!  And what to do about views?
     }
 if (conn != NULL)
     hFreeConn(&conn);
 
 return tdb;
 }
 #endif///def OMIT
 
 boolean tdbIsView(struct trackDb *tdb,char **viewName)
 // Is this tdb a view?  Will fill viewName if provided
 {
 if (tdbIsCompositeView(tdb))
     {
     if (viewName)
         {