36f5fda1377cc3f22da3db6ed52823186632ff15
angie
  Wed Aug 1 12:34:56 2012 -0700
Feature #8551 (Sequence Ontology terms for predicted functional effects on SNP details pages):Adding splice_region_variant, defined by SO as "A sequence variant in
which a change has occurred within the region of the splice site,
either within 1-3 bases of the exon or 3-8 bases of the intron."

diff --git src/hg/lib/snp125Ui.c src/hg/lib/snp125Ui.c
index e43c91e..50883cf 100644
--- src/hg/lib/snp125Ui.c
+++ src/hg/lib/snp125Ui.c
@@ -341,30 +341,31 @@
     { "near-gene-5", "upstream_gene_variant", "SO:0001631" },
     { "ncRNA", "nc_transcript_variant", "SO:0001619" },
     { "nonsense", "stop_gained", "SO:0001587" },
     { "missense", "missense_variant", "SO:0001583" },
     { "stop-loss", "stop_lost", "SO:0001578" },
     { "frameshift", "frameshift_variant", "SO:0001589" },
     { "cds-indel", "inframe_indel", "SO:0001820" },
     { "untranslated-3", "3_prime_UTR_variant", "SO:0001624" },
     { "untranslated-5", "5_prime_UTR_variant", "SO:0001623" },
     { "splice-3", "splice_acceptor_variant", "SO:0001574" },
     { "splice-5", "splice_donor_variant", "SO:0001575" },
     // And some that dbSNP doesn't use at this point, but we do, to match Ensembl:
     { "inframe_insertion", "inframe_insertion", "SO:0001821" },
     { "inframe_deletion", "inframe_deletion", "SO:0001822" },
     { "stop_retained_variant", "stop_retained_variant", "SO:0001567" },
+    { "splice_region_variant", "splice_region_variant", "SO:0001630" },
     { NULL, NULL, NULL }
 };
 
 static boolean snpSOFromFunc(char *funcTerm, char **retSoTerm, char **retSoId)
 /* Look up snpNNN.func term (or SO term) in static array snpFuncToSO and set
  * corresponding Sequence Ontology term and accession; return TRUE if found. */
 {
 if (isEmpty(funcTerm))
     return FALSE;
 int i;
 for (i = 0;  snpFuncToSO[i].funcTerm != NULL;  i++)
     {
     struct snpFuncSO *info = &(snpFuncToSO[i]);
     if (sameString(funcTerm, info->funcTerm) || sameString(funcTerm, info->soTerm))
 	{