2bd9040f20579ce508850f82bb14f6e428e5de0f
braney
  Mon Aug 6 13:50:35 2012 -0700
stop building the proteome browser binaries and the protein library. This required a small change to hgGene which had a little bit of code supporting the SAM T-02 links that were only present in sacCer1 #5740
diff --git src/hg/hgGene/makefile src/hg/hgGene/makefile
index d59362f..b026cf8 100644
--- src/hg/hgGene/makefile
+++ src/hg/hgGene/makefile
@@ -1,45 +1,45 @@
 include ../../inc/common.mk
 
 L += $(MYSQLLIBS) -lm
 MYLIBDIR = ../../lib/$(MACHTYPE)
-MYLIBS =  ${MYLIBDIR}/jkpbap.a $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
+MYLIBS =  $(MYLIBDIR)/jkhgap.a $(MYLIBDIR)/jkweb.a
 
 A = hgGene
 
 O = hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o\
     flyBaseInfo.o go.o info.o links.o microarray.o \
     method.o localization.o mrnaDescriptions.o otherOrgs.o\
     pathways.o pseudoGene.o rgdInfo.o rnaStructure.o sequence.o swissProtComments.o \
     synonym.o wikiTrack.o geneReviews.o
 
 include ../../inc/cgi_build_rules.mk
 
 my::
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgGeneData ${CGI_BIN}-${USER}/
 	chmod -R a+rX ${CGI_BIN}-${USER}/hgGeneData
 
 install::
 	rm -fr ${DESTDIR}${CGI_BIN}/hgGeneData
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgGeneData \
 		${DESTDIR}${CGI_BIN}/
 	chmod -R a+rX ${DESTDIR}${CGI_BIN}/hgGeneData
 
 alpha::
 	rm -fr ${CGI_BIN}/hgGeneData
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgGeneData ${CGI_BIN}/
 	chmod -R g+w ${CGI_BIN}/hgGeneData
 	chmod -R a+rX ${CGI_BIN}/hgGeneData
 
 beta::
 	rm -fr ${CGI_BIN}-beta/hgGeneData
 	rsync -aO --exclude=CVS/ --exclude=.svn/ --delete hgGeneData ${CGI_BIN}-beta/
 	chmod -R g+w ${CGI_BIN}-beta/hgGeneData
 	chmod -R a+rX ${CGI_BIN}-beta/hgGeneData
 
 compile: $O 
 	${CC} $O ${MYLIBS} ${L}
 	mv ${AOUT} $A${EXE}
 
 test:
 	${CGI_BIN}-${USER}/$A hgg_gene=D43968 hgg_chrom=chr21 hgg_start=35080500 hgg_end=35181383 db=hg16 hgsid=68172