File Changes for vsmalladi

v271_preview2 to v271_base (2012-07-31 to 2012-08-07) v271

• python/programs/cvValidate/makefile
  • lines changed 27, context: html, text, full: html, text
    Forgot to commit makefile for cvValidate.
• src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuHistone.release2.notes
  • lines changed 516, context: html, text, full: html, text
    Added release 2 notes of track. Redmine #6703.
• src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuRnaSeq.release1.notes
  • lines changed 443, context: html, text, full: html, text
    Added release 1 notes for track. Redmine #107
• src/hg/makeDb/doc/encodeDccMm9/wgEncodePsuTfbs.release2.notes
  • lines changed 566, context: html, text, full: html, text
    Added releases 2 notes for track. Redmine #7516.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 2, context: html, text, full: html, text
    Fixed sex of G1E and G1E-ER4 cell line to be M. Redmine #6703, #107.
  • lines changed 1, context: html, text, full: html, text
    This primary cell can come from either male or female..
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    Redmine #7663
    Q6. Fixed spelling of Facility
    Q7. Made VendorId lowercase for iPS_hFib2_IPS5
    
  • lines changed 2, context: html, text, full: html, text
    Redmine #7663. Fixed Description to include line information.
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in the Description of FV-progenitor cells.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Removed extra rnaExtract information at the composite stanza.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra
  • lines changed 8, context: html, text, full: html, text
    Fixed the MEL Cell line to be referenced as M rather than U. Redmine #7516, #6703.
  • lines changed 11, context: html, text, full: html, text
    Fixed sex of G1E and G1E-ER4 cell line to be M. Redmine #6703, #107.
  • lines changed 49, context: html, text, full: html, text
    Fixed control's that stated None when they should state Input. Redmine #6703.
  • lines changed 190, context: html, text, full: html, text
    Revoked MEL input not used. Updated Sort Order. Redmine #6703."
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuRnaSeq.ra
  • lines changed 253, context: html, text, full: html, text
    Fixed sex of G1E and G1E-ER4 cell line to be M. Redmine #6703, #107.
  • lines changed 73, context: html, text, full: html, text
    Fixed cell line designations from Megakaryocyte and Erythroblast from U to B. Redmine #107.
  • lines changed 2, context: html, text, full: html, text
    Updated expVars to add readType. Redmone #107.
  • lines changed 3, context: html, text, full: html, text
    Removed the localization and rnaExtract added to the composite level. Redmine #8659.
  • lines changed 152, context: html, text, full: html, text
    Fixed long label for 1 experiment. Added labExpId for experimetns to be an expVar. Redmine #107.
  • lines changed 301, context: html, text, full: html, text
    Added UCSC accession numbers. Redmine #107.
  • lines changed 133, context: html, text, full: html, text
    Added md5sum to metadata. Redmine #107.
  • lines changed 2, context: html, text, full: html, text
    Fixed md5sum error for file. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 28, context: html, text, full: html, text
    Fixed the MEL Cell line to be referenced as M rather than U. Redmine #7516, #6703.
  • lines changed 140, context: html, text, full: html, text
    Fixed typo in DDF that had control as None instead of Input. Redmine #7516.
  • lines changed 913, context: html, text, full: html, text
    Added 6 time course datasets. Redmine #7516.
  • lines changed 157, context: html, text, full: html, text
    Added last input controls for time course datasets. Redmin #7516.
  • lines changed 2, context: html, text, full: html, text
    Added treatment as an experimental var. Redmine #7516.
  • lines changed 44, context: html, text, full: html, text
    Added labExpId to fileSortOrder, metaDb and expVars. Redmine #7516.
  • lines changed 205, context: html, text, full: html, text
    Added ucsc accession numbers and md5sum. Redmine #7516.
  • lines changed 78, context: html, text, full: html, text
    Added controlId's for new experiments. Redmine #7516
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Removed extra rnaExtract information at the composite stanza.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.html
  • lines changed 44, context: html, text, full: html, text
    Added skeleton of Description Page. Redmine #109.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra
  • lines changed 3, context: html, text, full: html, text
    Fixed default track height and sort order. Redmine #109.
  • lines changed 5, context: html, text, full: html, text
    Fixed sorting order of Treatment Column for blank to be first. Redmine #109.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.html
  • lines changed 24, context: html, text, full: html, text
    Updated track defaults and track description. Redmine #6703.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra
  • lines changed 1, context: html, text, full: html, text
    Fixed the MEL Cell line to be referenced as M rather than U. Redmine #7516, #6703.
  • lines changed 2, context: html, text, full: html, text
    Fixed sex of G1E and G1E-ER4 cell line to be M. Redmine #6703, #107.
  • lines changed 52, context: html, text, full: html, text
    Added reference to release2 html file and updated short labels. Redmine #6703.
  • lines changed 70, context: html, text, full: html, text
    Revoked MEL input not used. Updated Sort Order. Redmine #6703."
  • lines changed 1, context: html, text, full: html, text
    Added in control id column. Redmine # 6703.
  • lines changed 20, context: html, text, full: html, text
    Updated track defaults and track description. Redmine #6703.
  • lines changed 1, context: html, text, full: html, text
    Added GEO Sample Accession in file sort order.
  • lines changed 1, context: html, text, full: html, text
    Accidently removked a k for an Pk in an object name. Redmine #6703.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.html
  • lines changed 65, context: html, text, full: html, text
    Updated track Description. Redmine #107.
  • lines changed 5, context: html, text, full: html, text
    Updated Credits section for track. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra
  • lines changed 126, context: html, text, full: html, text
    Fixed sex of G1E and G1E-ER4 cell line to be M. Redmine #6703, #107.
  • lines changed 36, context: html, text, full: html, text
    Fixed cell line designations from Megakaryocyte and Erythroblast from U to B. Redmine #107.
  • lines changed 114, context: html, text, full: html, text
    Updated defaults and seperated time course datasets. Redmine #107.
  • lines changed 76, context: html, text, full: html, text
    Updated long and short labels. Redmine #107.
  • lines changed 57, context: html, text, full: html, text
    Updated sortOrder of view, Short labels for Plus and Minus Signal and added geoSampleAccession for fileSortOrder. Also updated default view ranges for Signal data. Redmine #107.
  • lines changed 4, context: html, text, full: html, text
    Fixed long label for 1 experiment. Added labExpId for experimetns to be an expVar. Redmine #107.
  • lines changed 1, context: html, text, full: html, text
    Fixed typo in fileSortOrder for replicate. Redmine #107.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.html
  • lines changed 5, context: html, text, full: html, text
    Updated credits section. Redmine #7516.
  • lines changed 17, context: html, text, full: html, text
    Added release notes. Redmine #7516.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.ra
  • lines changed 5, context: html, text, full: html, text
    Fixed the MEL Cell line to be referenced as M rather than U. Redmine #7516, #6703.
  • lines changed 166, context: html, text, full: html, text
    Added 6 time course datasets. Redmine #7516.
  • lines changed 54, context: html, text, full: html, text
    Added last input controls for time course datasets. Redmin #7516.
  • lines changed 89, context: html, text, full: html, text
    Updated track defaults and seperated time course data out. Redmine #7516.
  • lines changed 1, context: html, text, full: html, text
    Added controlId into the fileSortOrder. Redmine #7516.
  • lines changed 6, context: html, text, full: html, text
    Moved Time-Course Inputs under the Time-Course G1E-ER4 column. Redmine #7516.
  • lines changed 64, context: html, text, full: html, text
    Fixed long and short labels. Redmine #7516.
  • lines changed 37, context: html, text, full: html, text
    Fixed long and short labels. Also updated signal to be at height 50. Redmine #7516.
  • lines changed 18, context: html, text, full: html, text
    Modified "Time Course" -> "TC" to be consistent with RNA-seq data set. Redmine #7516.
  • lines changed 7, context: html, text, full: html, text
    Fixed the default Signal Range for TimeCourse datasets. Redmine #7516.
  • lines changed 1, context: html, text, full: html, text
    Added labExpId to fileSortOrder, metaDb and expVars. Redmine #7516.
  • lines changed 1, context: html, text, full: html, text
    Added geoSample in fileSortOrder. Redmine #7516.