Commits for hiram
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v270_base to v271_preview (2012-07-17 to 2012-07-24) v271
- initial files from makeGenomeDb.pl
- src/hg/makeDb/trackDb/human/hg19Patch9/description.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19Patch9/gap.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19Patch9/gold.html - lines changed 36, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19Patch9/trackDb.ra - lines changed 8, context: html, text, full: html, text
- adding hg19Patch9 to the build
- src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
- running repeat masker then ready for alignments
- src/hg/makeDb/doc/hg19Patch9.txt - lines changed 586, context: html, text, full: html, text
- specific for patch9
- src/hg/makeDb/trackDb/human/hg19/altSeqComposite9.ra - lines changed 104, context: html, text, full: html, text
- testing patch9 tracks
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
- enable the ctgPos2, altSequence and testChainHg19 tracks
- src/hg/makeDb/trackDb/human/hg19Patch9/trackDb.ra - lines changed 30, context: html, text, full: html, text
- done with the patch 9 build
- src/hg/makeDb/doc/hg19Patch9.txt - lines changed 70, context: html, text, full: html, text
- done with the patch 9 build
- src/hg/makeDb/doc/hg19.txt - lines changed 7, context: html, text, full: html, text
- minimal trackDb for gold gap pickup
- src/hg/makeDb/trackDb/treeShrew/tupBel1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/treeShrew/tupBel1/gap.html - lines changed 31, context: html, text, full: html, text
- src/hg/makeDb/trackDb/treeShrew/tupBel1/gold.html - lines changed 33, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/sloth/choHof1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/sloth/choHof1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/sloth/choHof1/trackDb.ra - lines changed 6, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/armadillo/dasNov3/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/armadillo/dasNov3/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/kangarooRat/dipOrd1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/kangarooRat/dipOrd1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/hedgehog/eriEur1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/hedgehog/eriEur1/gold.html - lines changed 22, context: html, text, full: html, text
- src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra - lines changed 8, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/gadMor/gadMor1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/gadMor/gadMor1/gold.html - lines changed 22, context: html, text, full: html, text
- loaded tables for the primary track
- src/hg/makeDb/doc/hg19.txt - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/doc/hg19Patch9.txt - lines changed 3, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/moleRat/hetGla2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/moleRat/hetGla2/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/latCha/latCha1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/latCha/latCha1/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/birds/melUnd1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/birds/melUnd1/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/gibbon/nomLeu2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/gibbon/nomLeu2/gold.html - lines changed 21, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/pika/ochPri2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pika/ochPri2/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pika/ochPri2/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/oreNil/oreNil2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/oreNil/oreNil2/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/bushbaby/otoGar3/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/bushbaby/otoGar3/gold.html - lines changed 21, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/baboon/papHam1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/baboon/papHam1/gold.html - lines changed 22, context: html, text, full: html, text
- src/hg/makeDb/trackDb/baboon/papHam1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/rockHyrax/proCap1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rockHyrax/proCap1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rockHyrax/proCap1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/megabat/pteVam1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/megabat/pteVam1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/megabat/pteVam1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/rhesus/rheMac3/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/rhesus/rheMac3/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/saiBol/saiBol1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/saiBol/saiBol1/gold.html - lines changed 21, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/shrew/sorAra1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/shrew/sorAra1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/shrew/sorAra1/trackDb.ra - lines changed 8, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/squirrel/speTri2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/squirrel/speTri2/gold.html - lines changed 21, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/pig/susScr3/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/pig/susScr3/gold.html - lines changed 24, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/tarsier/tarSyr1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tarsier/tarSyr1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/tarsier/tarSyr1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/manatee/triMan1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/manatee/triMan1/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/dolphin/turTru2/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/dolphin/turTru2/gold.html - lines changed 22, context: html, text, full: html, text
- up to date page contents from makeGenomeDb.pl
- src/hg/makeDb/trackDb/alpaca/vicPac1/gap.html - lines changed 62, context: html, text, full: html, text
- src/hg/makeDb/trackDb/alpaca/vicPac1/gold.html - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/alpaca/vicPac1/trackDb.ra - lines changed 7, context: html, text, full: html, text
- not ready for papAnu1
- src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text
- adding choHof1 to transMapDb list
- src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
- setting default track visibilities
- src/hg/makeDb/trackDb/sloth/choHof1/trackDb.ra - lines changed 19, context: html, text, full: html, text
- done and in the pushQ 006261 redmin 7668
- src/hg/makeDb/doc/choHof1.txt - lines changed 19, context: html, text, full: html, text
- setting default visibilities
- src/hg/makeDb/trackDb/armadillo/dasNov3/trackDb.ra - lines changed 19, context: html, text, full: html, text
- done and in the pushQ
- src/hg/makeDb/doc/dasNov3.txt - lines changed 18, context: html, text, full: html, text
- adjusting default track vis
- src/hg/makeDb/trackDb/kangarooRat/dipOrd1/trackDb.ra - lines changed 13, context: html, text, full: html, text
- done and in the pushQ
- src/hg/makeDb/doc/dipOrd1.txt - lines changed 18, context: html, text, full: html, text
- setting default visibility tracks
- src/hg/makeDb/trackDb/hedgehog/eriEur1/trackDb.ra - lines changed 15, context: html, text, full: html, text
- done and in the pushQ
- src/hg/makeDb/doc/eriEur1.txt - lines changed 18, context: html, text, full: html, text
- fixing hgsc.bcm.edu conditions for use URL
- src/hg/utils/automation/makeDownloads.pl - lines changed 1, context: html, text, full: html, text
- felCat5 done and in the pushQ
- src/hg/makeDb/doc/felCat4.txt - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/doc/felCat5.txt - lines changed 19, context: html, text, full: html, text
- gadMor1 done and in the pushQ
- src/hg/makeDb/doc/gadMor1.txt - lines changed 19, context: html, text, full: html, text
- setting default tracks
- src/hg/makeDb/trackDb/cat/felCat5/trackDb.ra - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/gadMor/gadMor1/trackDb.ra - lines changed 14, context: html, text, full: html, text
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