1f163a84db47d2732e0b2d36d51a86a6308b2c34
tdreszer
  Mon Jul 23 11:52:04 2012 -0700
Another round of checkins as dictated by Jim.  Required to add a space between 'for' and '('.  Can this really be justified?
diff --git src/hg/hgTracks/simpleTracks.c src/hg/hgTracks/simpleTracks.c
index 3b422d3..5f5d4da 100644
--- src/hg/hgTracks/simpleTracks.c
+++ src/hg/hgTracks/simpleTracks.c
@@ -3648,32 +3648,32 @@
 int rowOffset, i;
 struct linkedFeaturesSeries *lfs;
 struct linkedFeatures *lfList = NULL, *lf;
 
 AllocVar(lfs);
 lfs->name = cloneString(lfsbed->name);
 lfs->start = lfsbed->chromStart;
 lfs->end = lfsbed->chromEnd;
 lfs->orientation = orientFromChar(lfsbed->strand[0]);
 
 /* Get linked features */
 for (i = 0; i < lfsbed->lfCount; i++)
     {
     AllocVar(lf);
     sprintf(rest, "qName = '%s'", lfsbed->lfNames[i]);
-    sr = hRangeQuery(conn, lfsbed->pslTable, lfsbed->chrom,
-        lfsbed->lfStarts[i], lfsbed->lfStarts[i] + lfsbed->lfSizes[i], rest, &rowOffset);
+    sr = hRangeQuery(conn, lfsbed->pslTable, lfsbed->chrom, lfsbed->lfStarts[i],
+                     lfsbed->lfStarts[i] + lfsbed->lfSizes[i], rest, &rowOffset);
     if ((row = sqlNextRow(sr)) != NULL)
 	{
 	struct psl *psl = pslLoad(row+rowOffset);
 	lf = lfFromPsl(psl, FALSE);
 	slAddHead(&lfList, lf);
 	}
     sqlFreeResult(&sr);
     }
 slReverse(&lfList);
 sqlFreeResult(&sr);
 hFreeConn(&conn);
 lfs->features = lfList;
 return lfs;
 }
 
@@ -11562,31 +11562,33 @@
 struct sqlConnection *conn = hAllocConn(database);
 char *geneLabel = NULL;
 
 char *omimGeneLabel = cartUsualString(cart, "omimGene.label", "OMIM ID");
 
 if (sameWord(omimGeneLabel, "OMIM ID"))
     {
     geneLabel = el->name;
     }
 else
     {
     if (sameWord(omimGeneLabel, "UCSC gene symbol"))
         {
         /* get the gene symbol of the exact KG that matches not only ID but also genomic position */
         safef(query, sizeof(query),
-        "select x.geneSymbol from kgXref x, omimToKnownCanonical c, knownGene k, omimGene o where c.omimId='%s' and c.kgId=x.kgId and k.name=x.kgId and o.name=c.omimId and o.chrom=k.chrom and k.txStart=%d and k.txEnd=%d",
+              "select x.geneSymbol from kgXref x, omimToKnownCanonical c, knownGene k, omimGene o"
+              " where c.omimId='%s' and c.kgId=x.kgId and k.name=x.kgId and o.name=c.omimId"
+              " and o.chrom=k.chrom and k.txStart=%d and k.txEnd=%d",
         el->name, el->chromStart, el->chromEnd);
         geneLabel = sqlQuickString(conn, query);
         }
     else
         {
         safef(query, sizeof(query),
 	"select geneSymbol from omimGeneMap where omimId='%s'", el->name);
 	geneLabel = sqlQuickString(conn, query);
 	}
 
     if (geneLabel == NULL)
 	{
 	geneLabel = el->name;
 	}
     }