Commits for vsmalladi

v270_base to v271_preview (2012-07-17 to 2012-07-24) v271

• Added 3 cell lines and added protocol link for a 4th cell line. Redmine #7502 #7503.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 61, context: html, text, full: html, text
• Registered antibody for PSU.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 15, context: html, text, full: html, text
• Fixing missing term.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added Replicate 3 of the GATA1 Megakaryo data set and added V2 of pooled data that had to be reanalyzed.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 149, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.ra - lines changed 33, context: html, text, full: html, text
• Added md5sum's. Redmine #7516.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 25, context: html, text, full: html, text
• Added 2 new cell lines for the Stam lab for Mouse submissions.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 35, context: html, text, full: html, text
• Fixed typo in type spelling.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Fixed spelling of KO instead of K0. Updated Vendor Name.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Added updates to Dnase DAF. Redmine #109.
  • src/hg/encode/DAFs/3.0/mm9/wgEncodePsuDnase.daf - lines changed 6, context: html, text, full: html, text
• Fixed vendor id for antibody, 2 numbers were switched.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
• Moved over approved changes from beta/cv.ra to public/cv.ra. Redmine #8500.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 783, context: html, text, full: html, text
• Fixed MEL strain to be Unknown rather than C57BL/6. Redmine #8435.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 38, context: html, text, full: html, text
• Fixed objStatus message that referenced a placeholder experiment number.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 7, context: html, text, full: html, text
• The vendorId in the tag was incorrect was FLI1SC365 should FLI1SC356.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added new registraion for Ren lab, includes age, strain and cell.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 30, context: html, text, full: html, text
• Added data from submission 7497. Redmine #7516.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra - lines changed 241, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.ra - lines changed 19, context: html, text, full: html, text
• Forgot type age for stanza.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Missed spelling of tag.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added missing order urls.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Added new strain.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Fixed tags starting with numbers in strain for PSU Track. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.ra - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuTfbs.release2.ra - lines changed 30, context: html, text, full: html, text
• Fixed tag error that begin with number. Redmine #4468.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 44, context: html, text, full: html, text
• Added 2 new cell registration for Hardison lab. Also correct a few typo's in the cv.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 47, context: html, text, full: html, text
• Changed protocol refrence lines for 6 cells lines that don't have approved growth protocols yet.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 6, context: html, text, full: html, text
• Adding 5 directional data sets to track. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuRnaSeq.ra - lines changed 1131, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra - lines changed 298, context: html, text, full: html, text