Commits for wong
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v270_base to v271_preview (2012-07-17 to 2012-07-24) v271
- cleaned up some metaData
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 116, context: html, text, full: html, text
- adding expIds and accession
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 431, context: html, text, full: html, text
- removing prog= so default behavior happens
- src/hg/encode/getTrackReferences/getTrackReferences - lines changed 2, context: html, text, full: html, text
- removed autohelp
- src/hg/encode/raDiff/raDiff - lines changed 5, context: html, text, full: html, text
- added error message, and made autohelp off, also forgot to indent writeScriptOut last time
- src/hg/encode/encodeQaInit/encodeQaInit - lines changed 7, context: html, text, full: html, text
- make the selection more strict for detecting the composite name in a filename
- src/hg/encode/encodeQaPrepareRelease/encodeQaPrepareRelease - lines changed 2, context: html, text, full: html, text
- fixed labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 165, context: html, text, full: html, text
- added reverse mode
- src/hg/encode/raDiff/raDiff - lines changed 6, context: html, text, full: html, text
- adding in notes file for us dnase
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release6.notes - lines changed 2369, context: html, text, full: html, text
- added in new html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.html - lines changed 116, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 1, context: html, text, full: html, text
- added in new haib tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 2731, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 489, context: html, text, full: html, text
- added in new histone tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 489, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra - lines changed 109, context: html, text, full: html, text
- fixed short and long labels
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra - lines changed 24, context: html, text, full: html, text
- added md5sums
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 25, context: html, text, full: html, text
- added in expIds
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 41, context: html, text, full: html, text
- added in first version of notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release5.notes - lines changed 2538, context: html, text, full: html, text
- fixed too long label
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra - lines changed 1, context: html, text, full: html, text
- added in new cshl release 3 for mouse
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 1325, context: html, text, full: html, text
- forgot tags
- src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- added in new cshl long mouse tracks
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 4291, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 938, context: html, text, full: html, text
- removing K562/ZNF from dev as requested by richard
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 91, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 51, context: html, text, full: html, text
- received an error reason
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra - lines changed 17, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 13, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 91, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 51, context: html, text, full: html, text
- making initial patch for uw affy removal of k562 data
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.ra - lines changed 1523, context: html, text, full: html, text
- removing the bad K562 Stanzas
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.ra - lines changed 64, context: html, text, full: html, text
- removing bad K562 data
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra - lines changed 270, context: html, text, full: html, text
- updating notes to reflect K562/ZNF pull
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwHistone.release5.notes - lines changed 223, context: html, text, full: html, text
- removing K562/ZNF data, adding replicate filterCompitste
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 488, context: html, text, full: html, text
- removing K562/ZNF stanzas from uw dnase
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.ra - lines changed 80, context: html, text, full: html, text
- fixed uw dnase for qa
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.html - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 285, context: html, text, full: html, text
- moving over to release 5 html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.html - lines changed 94, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.ra - lines changed 1, context: html, text, full: html, text
- updated notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release6.notes - lines changed 384, context: html, text, full: html, text
- removed comma from file list
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwDnase.release6.notes - lines changed 5, context: html, text, full: html, text
- adding patch html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 96, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.ra - lines changed 1, context: html, text, full: html, text
- added patch notes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 4, context: html, text, full: html, text
- corrected revoke message for uw affy exon
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 2, context: html, text, full: html, text
- more html corrections
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 2, context: html, text, full: html, text
- adding in saha treatments for open chrom
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
- qa fixes for uw dnase mark 2
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.html - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 63, context: html, text, full: html, text
- added breaks for easier reading
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 1, context: html, text, full: html, text
- removing more zinc finger related messages
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 5, context: html, text, full: html, text
- clarifying revoke message
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.html - lines changed 2, context: html, text, full: html, text
- changing control to Control
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra - lines changed 7, context: html, text, full: html, text
- added in new open chrom dnase tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 937, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromDnase.release3.ra - lines changed 193, context: html, text, full: html, text
- qa fixes for uw histone html file
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.release5.html - lines changed 2, context: html, text, full: html, text
- added in new uw dgf tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 983, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.release4.ra - lines changed 518, context: html, text, full: html, text
- adding in new tracks for haib tfbs
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 1093, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 193, context: html, text, full: html, text
- added in some changed for the K562/ZNF revoke for uw affy exon
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.patch.ra - lines changed 11, context: html, text, full: html, text
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