4dcb41c179c6fae38abffb52dd2b764b74301c7c
angie
  Mon Jul 30 16:39:17 2012 -0700
Feature #8551 (Sequence Ontology terms for predicted functional effects on SNP details pages):at Ensembl's request, instead of displaying dbSNP's predicted function terms, instead show
terms from the Sequence Ontology (SO).  Where possible, terms from Ensembl's list at
http://staging.ensembl.org/info/docs/variation/predicted_data.html are used.

diff --git src/hg/inc/snp125Ui.h src/hg/inc/snp125Ui.h
index 73d7912..3733cc0 100644
--- src/hg/inc/snp125Ui.h
+++ src/hg/inc/snp125Ui.h
@@ -88,37 +88,42 @@
 extern char *snp125ClassOldColorVars[];
 extern char *snp125ClassDataName[];
 extern char *snp125ClassDefault[];
 extern int snp125ClassArraySize;
 
 /****** Valid related controls *******/
 
 extern char *snp125ValidLabels[];
 extern char *snp125ValidOldColorVars[];
 extern char *snp125ValidDataName[];
 extern char *snp125ValidDefault[];
 extern int snp125ValidArraySize;
 
 /****** Func related controls *******/
 
+char *snpMisoLinkFromFunc(char *funcTerm);
+/* If we can map funcTerm to a Sequence Ontology term, return a link to the MISO SO browser;
+ * otherwise just return the same term. */
+
 extern char *snp125FuncLabels[];
 extern char *snp125FuncOldColorVars[];
 extern char *snp125FuncDataName[];
 extern char *snp125FuncDefault[];
 extern char **snp125FuncDataSynonyms[];
 extern int snp125FuncArraySize;
 
+
 /****** LocType related controls *******/
 /* unknown, range, exact, between,
    rangeInsertion, rangeSubstitution, rangeDeletion */
 
 extern char *snp125LocTypeLabels[];
 extern char *snp125LocTypeOldColorVars[];
 extern char *snp125LocTypeDataName[];
 extern char *snp125LocTypeDefault[];
 extern int snp125LocTypeArraySize;
 
 /****** Exception related controls *******/
 
 extern char *snp132ExceptionLabels[];
 extern char *snp132ExceptionVarName[];
 extern char *snp132ExceptionDefault[];