ffefd01e2245c524d4487d2e923bb48b1c385a21
angie
  Mon Jul 30 09:05:06 2012 -0700
Track #8360 (snp137): regenerated snp137CodingDbSnp after finding that itwas omitting func code 43 (stop-loss) and many rows with 45 (cds-indel) that
also had NULL frame... although that may be a red flag for the cds-indel's.
I am waiting to hear back from dbSNP about some possible misuses of cds-indel.

diff --git src/hg/lib/snp125Coding.sql src/hg/lib/snp125Coding.sql
index eb4d0ed..eb6affb 100644
--- src/hg/lib/snp125Coding.sql
+++ src/hg/lib/snp125Coding.sql
@@ -1,23 +1,23 @@
 # snp125Coding.sql was originally generated by the autoSql program, which also 
 # generated snp125Coding.c and snp125Coding.h.  This creates the database representation of
 # an object which can be loaded and saved from RAM in a fairly 
 # automatic way.
 
 #Annotations of the effects of SNPs on translated protein sequence.
 CREATE TABLE snp125Coding (
     bin smallint not null,      # Bin number for browser speedup
     chrom varchar(255) not null,	# Reference sequence chromosome or scaffold
     chromStart int unsigned not null,	# Start position in chromosome
     chromEnd int unsigned not null,	# End position in chromosome
     name varchar(255) not null,	# Reference SNP identifier
     transcript varchar(255) not null,	# Accession of the transcript modified by SNP
-    frame enum("1", "2", "3")  not null,	# Frame of transcript's codon modified by SNP
+    frame enum("1", "2", "3", "n/a")  not null,	# Frame of transcript's codon modified by SNP
     alleleCount int not null,	# Number of annotated alleles for SNP
     funcCodes longblob not null,	# dbSNP function codes (e.g. 42=missense)
     alleles longblob not null,	# Observed nucleotide alleles corresponding to funcCodes
     codons longblob not null,	# Codons corresponding to funcCodes
     peptides longblob not null,	# Amino acid sequence corresponding to funcCodes
               #Indices
     INDEX(chrom(8),bin),
     INDEX(name(20))
 );
