File Changes for cricket
switch to commits view, user indexv271_preview to v271_preview2 (2012-07-24 to 2012-07-31) v271
- src/hg/encode/DAFs/3.0/hg19/wgEncodeGisRnaPet.daf
- lines changed 3, context: html, text, full: html, text
Adding the bedClusters fix for Gis Rna Pet
- src/hg/encode/DAFs/3.0/mm9/wgEncodeCshlLongRnaSeq.daf
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeFsuRepliChip.release2.notes
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release4.notes
- lines changed 2170, context: html, text, full: html, text
Adding release notes, needed to use loose option because of Morgan changes for the rawdata see ticket #7771
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeUwAffyExonArray.release4.notes
- lines changed 468, context: html, text, full: html, text
Preparing Uw Affy Exon Release 4, changing long labels, updating the origAssembly to only be there if needed, fixing differentiation.
- src/hg/makeDb/hgTrackDb/hgTrackDb.c
- lines changed 1, context: html, text, full: html, text
Changing some more white space after merging with previous commit
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
- lines changed 1, context: html, text, full: html, text
Changing the defintion of dccInternalNotes to specify a use for it. It looks like we may be reloading a lot of files
- lines changed 1, context: html, text, full: html, text
Added some comments about the Cage label
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
- lines changed 991, context: html, text, full: html, text
Adding in 4 replacement fastqs and dropping useless lines like treatment None
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeFsuRepliChip.ra
- lines changed 237, context: html, text, full: html, text
Adding new stanzas from submission 7727
- lines changed 39, context: html, text, full: html, text
Adding md5sums, expIds, accsssions, corrected H9ES
- lines changed 11, context: html, text, full: html, text
Adding in dateUnrestricted
- lines changed 3, context: html, text, full: html, text
Updating more dateUnrestricted
- lines changed 19, context: html, text, full: html, text
Chainging more restriction dates
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV4.ra
- lines changed 3, context: html, text, full: html, text
Correcting an error in expVars
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
- lines changed 36, context: html, text, full: html, text
Sorting out the V1, V3, V4 issue with NHEK, see ticket #7771
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra
- lines changed 154, context: html, text, full: html, text
Preparing Uw Affy Exon Release 4, changing long labels, updating the origAssembly to only be there if needed, fixing differentiation.
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 1, context: html, text, full: html, text
Changing this release 3 to release 4
- src/hg/makeDb/trackDb/human/hg19/wgEncodeFsuRepliChip.release2.ra
- lines changed 61, context: html, text, full: html, text
Adding new stanzas from submission 7727
- lines changed 2, context: html, text, full: html, text
Adding md5sums, expIds, accsssions, corrected H9ES
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
- lines changed 64, context: html, text, full: html, text
Promoted tier 2.5 cell lines and collapsed the HCT116 line in the matrix to represnt both Stanford and Haib samples
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.html
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.release4.ra
- lines changed 21, context: html, text, full: html, text
Sorting out the V1, V3, V4 issue with NHEK, see ticket #7771
- lines changed 5, context: html, text, full: html, text
Changed the rnaExtract to all, changed prostate to Prostate, changed two of the TssHmm files to be on by defualt
- lines changed 29, context: html, text, full: html, text
Making Brians small edits
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.ra
- lines changed 1531, context: html, text, full: html, text
Changing this release 3 to release 4
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release4.html
- lines changed 96, context: html, text, full: html, text
Starting to clean up long and short labels and adding the new html file
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release4.ra
- lines changed 1531, context: html, text, full: html, text
Changing this release 3 to release 4
- lines changed 33, context: html, text, full: html, text
Starting to clean up long and short labels and adding the new html file
- lines changed 10, context: html, text, full: html, text
Preparing Uw Affy Exon Release 4, changing long labels, updating the origAssembly to only be there if needed, fixing differentiation.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.release6.ra
- lines changed 7, context: html, text, full: html, text
Removed the 4 from 4OHTAM according to ticket 8408
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwRepliSeq.ra
- lines changed 191, context: html, text, full: html, text
Promoting the tier 2.5 cell lines and fixing the tags for the phase and the views
- src/hg/makeDb/trackDb/loadTracks
- lines changed 2, context: html, text, full: html, text
Changing some more white space after merging with previous commit
- lines changed 2, context: html, text, full: html, text
loadTracks did not belong in the previous commit, I am undoing it
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra
- lines changed 11, context: html, text, full: html, text
Updated tags for cell lines, should be no visible change
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