9723799cf6f1a8fb714ae1493b224b8e91aebf09
tdreszer
  Mon Jul 30 12:17:38 2012 -0700
Making final pass through tree of checkins as dictated by Jim. None of these changes should affect executables in any way. This pass is due to expanding fingerprint caused by kompare.
diff --git src/hg/hgc/lowelab.c src/hg/hgc/lowelab.c
index 91911bd..c13105e 100644
--- src/hg/hgc/lowelab.c
+++ src/hg/hgc/lowelab.c
@@ -3753,61 +3753,79 @@
 			printf("<td width=\"4%%\"><b>Length</b></td>\n");
 			printf("</tr>\n");
 
 			if (strcmp(crispr->strand, "+") == 0)
 			{
 				for (pairCount = 0; pairCount < (int) crispr->blockCount; pairCount++)
 				{
 					printf("<tr style=\"vertical-align: top;\">\n");
 
 					memset(tempSeq, '\0', sizeof(tempSeq));
 					memcpy(tempSeq, sequence->dna + crispr->chromStarts[pairCount], crispr->blockSizes[pairCount]);
 					printf("<td>%d</td><td>%s</td><td>%d</td>\n", crispr->chromStart + 1 + crispr->chromStarts[pairCount], tempSeq, crispr->blockSizes[pairCount]);
 					if (pairCount + 1 < crispr->blockCount)
 					{
 						memset(tempSeq, '\0', sizeof(tempSeq));
-						memcpy(tempSeq, sequence->dna + crispr->chromStarts[pairCount] + crispr->blockSizes[pairCount],
-							crispr->chromStarts[pairCount+1] - crispr->blockSizes[pairCount] - crispr->chromStarts[pairCount]);
-						printf("<td>%d</td><td>%s</td><td>%d</td>\n", crispr->chromStart + 1 + crispr->chromStarts[pairCount] + crispr->blockSizes[pairCount], tempSeq,
-							   crispr->chromStarts[pairCount+1] - crispr->blockSizes[pairCount] - crispr->chromStarts[pairCount]);
+					    memcpy(tempSeq, sequence->dna +
+					           crispr->chromStarts[pairCount] +
+					           crispr->blockSizes[pairCount],
+					           crispr->chromStarts[pairCount+1] -
+					           crispr->blockSizes[pairCount] -
+					           crispr->chromStarts[pairCount]);
+					    printf("<td>%d</td><td>%s</td><td>%d</td>\n",
+					           crispr->chromStart + 1 +
+					           crispr->chromStarts[pairCount] +
+					           crispr->blockSizes[pairCount],
+					           tempSeq,
+						   crispr->chromStarts[pairCount+1] -
+						   crispr->blockSizes[pairCount] -
+						   crispr->chromStarts[pairCount]);
 					}
 					else
 					{
 						printf("<td>&nbsp</td><td>&nbsp</td><td>&nbsp</td>\n");
 					}
 
 					printf("</tr>\n");
 				}
 			}
             else
 			{
 				for (pairCount = ((int)crispr->blockCount - 1); pairCount >= 0; pairCount--)
 				{
 					printf("<tr style=\"vertical-align: top;\">\n");
 
 					memset(tempSeq, '\0', sizeof(tempSeq));
 					memcpy(tempSeq, sequence->dna + crispr->chromStarts[pairCount], crispr->blockSizes[pairCount]);
 					reverseComplement(tempSeq, strlen(tempSeq));
 					printf("<td>%d</td><td>%s</td><td>%d</td>\n", crispr->chromStart + crispr->chromStarts[pairCount] + crispr->blockSizes[pairCount], tempSeq, crispr->blockSizes[pairCount]);
 					if (pairCount - 1 >= 0)
 					{
 						memset(tempSeq, '\0', sizeof(tempSeq));
-						memcpy(tempSeq, sequence->dna + crispr->chromStarts[pairCount-1] + crispr->blockSizes[pairCount-1],
-							   crispr->chromStarts[pairCount] - crispr->blockSizes[pairCount-1] - crispr->chromStarts[pairCount-1]);
+					    memcpy(tempSeq, sequence->dna +
+					           crispr->chromStarts[pairCount-1] +
+					           crispr->blockSizes[pairCount-1],
+						   crispr->chromStarts[pairCount] -
+						   crispr->blockSizes[pairCount-1] -
+						   crispr->chromStarts[pairCount-1]);
 						reverseComplement(tempSeq, strlen(tempSeq));
-						printf("<td>%d</td><td>%s</td><td>%d</td>\n", crispr->chromStart + crispr->chromStarts[pairCount], tempSeq,
-							   crispr->chromStarts[pairCount] - crispr->blockSizes[pairCount-1] - crispr->chromStarts[pairCount-1]);
+					    printf("<td>%d</td><td>%s</td><td>%d</td>\n",
+					           crispr->chromStart +
+					           crispr->chromStarts[pairCount], tempSeq,
+						   crispr->chromStarts[pairCount] -
+						   crispr->blockSizes[pairCount-1] -
+						   crispr->chromStarts[pairCount-1]);
 					}
 					else
 					{
 						printf("<td>&nbsp</td><td>&nbsp</td><td>&nbsp</td>\n");
 					}
 
 					printf("</tr>\n");
 				}
 			}
 
 			/* Close table */
 			printf("</tbody>\n");
 			printf("</table>\n");
 			printf("</td></tr></tbody>\n");
 			printf("</table>\n");