Commits for vsmalladi

v271_preview to v271_preview2 (2012-07-24 to 2012-07-31) v271

• Approved all changes and moved from public/cv.ra to beta/cv.ra. Redmine #8576.
  • src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 182, context: html, text, full: html, text
• Fixed 2 tag's that were not all uper case.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Added 5 cell line registrations for UW.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 85, context: html, text, full: html, text
• Added mouse strain for UW.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Added in the 2 experiments, with updated labels, md5sum's. Redmine #109.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuDnase.ra - lines changed 366, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra - lines changed 119, context: html, text, full: html, text
• Updated the protocol to missing since the protocol existing is actually a generic ChIP-Seq protocol. Redmine #7437.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Removed 2 terms that were deprecated:rank, labProtocolId. Level,Annotation and Uniqness were left as they are only on 1 track. Redmine #8286.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 30, context: html, text, full: html, text
• Added labels to many cell lines that used tissue with lower case. Redmine #7771, note @25.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Fixed tag to be uppercase for diffProtD_3h.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added 9 data-sets to track. All data has been loaded and displayed. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuRnaSeq.ra - lines changed 1870, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra - lines changed 463, context: html, text, full: html, text
• Updated tag for Estradiol treatment. Redmine #109.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra - lines changed 1, context: html, text, full: html, text
• Updated metadata for all RNA-seq data to have rnaExtract polyA and localization cell. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuRnaSeq.ra - lines changed 255, context: html, text, full: html, text
• First pass at short and long labels. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.ra - lines changed 188, context: html, text, full: html, text
• Made a few modifications to track description for better organization and clarity. In addition, add information. Redmine #107.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuRnaSeq.html - lines changed 15, context: html, text, full: html, text
• Updated labels for Estradiol treatment.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Updated track labels and View configuration. Redmine #109.
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra - lines changed 17, context: html, text, full: html, text
• Added treatment as an experimental variable. Redmine #109
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuDnase.ra - lines changed 2, context: html, text, full: html, text
• Experimentified track and fixed typo in trackDb. Redmine #109.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuDnase.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra - lines changed 1, context: html, text, full: html, text
• Added V2 of Signal data to replaced original submission that contained an empty file. Redmine #8653.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra - lines changed 33, context: html, text, full: html, text
• Updated include file to include the correct data sets for PSU TFBS and Histone.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.wgEncode.ra - lines changed 4, context: html, text, full: html, text
• Fixed mising order URL's
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 5, context: html, text, full: html, text
• Added md5sum and updated track description. Redmine #6703.
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuHistone.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuHistone.release2.html - lines changed 13, context: html, text, full: html, text