Commits for wong
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v271_preview to v271_preview2 (2012-07-24 to 2012-07-31) v271
- fixed the tags in affyRnaChip, comming in branch and testing hte shared branch thing
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 105, context: html, text, full: html, text
- updating notes file
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release2.notes - lines changed 6, context: html, text, full: html, text
- Revert "updating notes file"
This reverts commit 2d35026eff77e39f04dc072b74cfce019585778d.
- src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release2.notes - lines changed 6, context: html, text, full: html, text
- Merge branch 'master' into hg18TagCorrection
- fixed metadata and dates
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 139, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 49, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 98, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 170, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 47, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 122, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 300, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 230, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeMapability.ra - lines changed 16, context: html, text, full: html, text
- Revert "fixed metadata and dates"
This reverts commit fdd11ddb9f8b6e749175a07e86843ad18e0976fb.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 139, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 49, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 98, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 170, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 47, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 122, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 300, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 230, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeMapability.ra - lines changed 16, context: html, text, full: html, text
- correcting spacing and indentation
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- Merge branch 'master' into hg18TagCorrection
- fixing cell tier tags
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- fixed tag errors for gis pet hg18
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 87, context: html, text, full: html, text
- fizing tags for cshl short rna seq
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 48, context: html, text, full: html, text
- fixing tags for riken cage
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 62, context: html, text, full: html, text
- fixed tags in uw dnase seq
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 230, context: html, text, full: html, text
- fixed gisrna seq tags
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 20, context: html, text, full: html, text
- Revert "fixed gisrna seq tags"
This reverts commit 4066509926bc9530018d96135126dc8c7a214554.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 20, context: html, text, full: html, text
- Revert "fixed tags in uw dnase seq"
This reverts commit 2154fc5e2abf17b785892cc4c2b7bb599efc1abf.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 230, context: html, text, full: html, text
- Revert "fixing tags for riken cage"
This reverts commit 2a44d0254c171c351833b144781630eea5dda7b5.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 62, context: html, text, full: html, text
- Revert "fizing tags for cshl short rna seq"
This reverts commit 3e65bac5c9b15997f7e1ab0a5649596de840d738.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 48, context: html, text, full: html, text
- Revert "fixed tag errors for gis pet hg18"
This reverts commit ad65cd56e8afaae71d73ed6deda9fdd6dee9857b.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 87, context: html, text, full: html, text
- fixing the rest of the tags
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 139, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 21, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 46, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 82, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 19, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 59, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 300, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwDnaseSeq.ra - lines changed 230, context: html, text, full: html, text
- correcting cell tier tags
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 108, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.ra - lines changed 141, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 22, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 46, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 85, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 20, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 60, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 294, context: html, text, full: html, text
- removed prog= so default behavior happens
- src/hg/encode/getTrackReferences/getTrackReferences - lines changed 2, context: html, text, full: html, text
- splitting affyrna into patch.ra and normal.ra
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.patch.ra - lines changed 1000, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeAffyRnaChip.ra - lines changed 108, context: html, text, full: html, text
- adding trackDb changes or affy rna chip
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- Merge branch 'master' into hg18TagCorrection
- fixing things for QA
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisDnaPet.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 5, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 4, context: html, text, full: html, text
- loaded a lot of broad histone tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 2045, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra - lines changed 393, context: html, text, full: html, text
- more qa fixes for hg18 tag correction, this time correctin view tag errors
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 49, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlShortRnaSeq.ra - lines changed 98, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisPet.ra - lines changed 170, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeGisRnaSeq.ra - lines changed 48, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.ra - lines changed 122, context: html, text, full: html, text
- Merge branch 'hg18TagCorrection'
- added new haib tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 2185, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 388, context: html, text, full: html, text
- added in new tracks for open chrom chip
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 881, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra - lines changed 130, context: html, text, full: html, text
- added in new broad tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 3338, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra - lines changed 487, context: html, text, full: html, text
- corrected some metaDb errors
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 145, context: html, text, full: html, text
- loaded protocols and transcipt denovos for cshl long
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 928, context: html, text, full: html, text
- removed tableNames from transcipt denovos cshl long
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 97, context: html, text, full: html, text
- restoring labProtocolId, as Cshl uses it for their submissions. This was causing mass failures.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 12, context: html, text, full: html, text
- added in enw cshl mouse long tracks
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 3894, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 304, context: html, text, full: html, text
- adding in more haib tfbs tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 6007, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.release3.ra - lines changed 1061, context: html, text, full: html, text
- addedi in lat of Broad histone tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 696, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra - lines changed 90, context: html, text, full: html, text
- adding in replacement clusters for gisRnaPet
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 69, context: html, text, full: html, text
- aded md5sums
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 13, context: html, text, full: html, text
- added in last uw affy exon tracks
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwAffyExonArray.ra - lines changed 321, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.ra - lines changed 72, context: html, text, full: html, text
- moving patch changes in and correcting tags
- src/hg/makeDb/trackDb/human/hg19/wgEncodeUwAffyExonArray.release3.ra - lines changed 73, context: html, text, full: html, text
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