Commits for hiram

v272_preview2 to v272_base (2012-08-21 to 2012-08-28) v272

• completed rework of the phastCons phyloP groupings for the 60-way
  • src/hg/makeDb/doc/mm10.txt - lines changed 504, context: html, text, full: html, text
• rework groups in mm10 60-way phastCons and phyloP
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• new grouping with euarchontoglire subset
  • src/hg/makeDb/trackDb/mouse/mm10/cons60way.html - lines changed 15, context: html, text, full: html, text
• downloads done for the new phastCons phyloP subsets
  • src/hg/makeDb/doc/mm10.txt - lines changed 37, context: html, text, full: html, text
• add note about phyloFit
  • src/hg/makeDb/doc/mm10.txt - lines changed 4, context: html, text, full: html, text
• remove the Vertebrate subsets
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.60way.ra - lines changed 44, context: html, text, full: html, text
• sequence ready for browser build
  • src/hg/makeDb/doc/allMis1.txt - lines changed 71, context: html, text, full: html, text
• Medium ground finch, aka Darwin Finch
  • src/hg/utils/automation/configFiles/geoFor1.config.ra - lines changed 23, context: html, text, full: html, text
• adding canFam3 definitions to hg19
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
• prepare for release of chain/net canFam3 to replace canFam2
  • src/hg/makeDb/trackDb/human/hg19/chainCanFam2.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/chainCanFam3.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/netCanFam2.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/netCanFam3.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 16, context: html, text, full: html, text
• photo from Ed Green's Lab
  • src/hg/htdocs/images/Alligator_Mississippiensis.jpg - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
• initial contents from makeGenomeDb.pl
  • src/hg/makeDb/trackDb/gator/allMis1/description.html - lines changed 63, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gator/allMis1/gap.html - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gator/allMis1/gold.html - lines changed 34, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/gator/allMis1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• adding Alligator to the build
  • src/hg/makeDb/trackDb/makefile - lines changed 1, context: html, text, full: html, text