Commits for fang

v271_base to v272_preview (2012-08-07 to 2012-08-14) v272

• comment out stanzas whose datasets are revoked
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.ra - lines changed 22, context: html, text, full: html, text
• remove the digit that appearred in the beginning of age and celltype
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.ra - lines changed 77, context: html, text, full: html, text
• set revoke status to two CH12 entries missed earlier
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 2, context: html, text, full: html, text
• set controlId for those V2 datasets
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 25, context: html, text, full: html, text
• update expId for V2 datasets
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 71, context: html, text, full: html, text
• add revoke status to the input only dataset (Plac)
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 6, context: html, text, full: html, text
• add notes file
  • src/hg/makeDb/doc/encodeDccMm9/wgEncodeLicrTfbs.release3.notes - lines changed 826, context: html, text, full: html, text
• update release note
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.html - lines changed 1, context: html, text, full: html, text
• update the new datasets submitted before the freeze
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 300, context: html, text, full: html, text
• update the new datasets submitted before the freeze
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 1304, context: html, text, full: html, text
• update new datasets submitted before the freeze
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.release3.ra - lines changed 199, context: html, text, full: html, text
• update new datasets submitted before the freeze
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1585, context: html, text, full: html, text
• modify release note
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.html - lines changed 2, context: html, text, full: html, text
• changed a129=129 to S129=129 where S129 is listed as the tag for term 129 in cv
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 1, context: html, text, full: html, text
• add a letter a in front of strain 129DLCR which started with digit
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 5, context: html, text, full: html, text
• changed S129=129 back to a129=129, otherwise it would be messy to try to get right sort order with those strains share 129 prefix, I think the tag S129 for the term 129 should be changed to 129
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.release2.ra - lines changed 4, context: html, text, full: html, text
• delete input only datasets
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 301, context: html, text, full: html, text
• created notes file
  • src/hg/makeDb/doc/encodeDccMm9/wgEncodeLicrTfbs.release3.notes - lines changed 69, context: html, text, full: html, text
• clean up long labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 89, context: html, text, full: html, text
• clean up long labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 7, context: html, text, full: html, text
• modified V2 statement based on Steve's input, note 83, #7502
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeLicrTfbs.ra - lines changed 25, context: html, text, full: html, text
• fix labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.ra - lines changed 18, context: html, text, full: html, text
• modified release notes
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.html - lines changed 1, context: html, text, full: html, text
• add TFBS and LICR in the text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeLicrTfbs.release3.html - lines changed 2, context: html, text, full: html, text
• added age to long labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 92, context: html, text, full: html, text
• added Signal to Raw which suppose to be Raw Signal
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 23, context: html, text, full: html, text
• clean up long labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 5, context: html, text, full: html, text
• update notes file after removing the *Plac* input only file that have not been released that was revoked previously using the procedure of released dataset
  • src/hg/makeDb/doc/encodeDccMm9/wgEncodeLicrTfbs.release3.notes - lines changed 43, context: html, text, full: html, text
• clean up short labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 7, context: html, text, full: html, text
• clean up short labels
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDgf.ra - lines changed 6, context: html, text, full: html, text