Commits for hiram

v271_base to v272_preview (2012-08-07 to 2012-08-14) v272

• default vis
  • src/hg/makeDb/trackDb/birds/geoFor1/trackDb.7way.ra - lines changed 2, context: html, text, full: html, text
• default visibilities and correct range on the phyloP overall
  • src/hg/makeDb/trackDb/birds/geoFor1/trackDb.7way.ra - lines changed 7, context: html, text, full: html, text
• 7-way done and ready for downloads
  • src/hg/makeDb/doc/geoFor1.txt - lines changed 992, context: html, text, full: html, text
• download files ready to go
  • src/hg/makeDb/doc/geoFor1.txt - lines changed 143, context: html, text, full: html, text
• initial contents
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 416, context: html, text, full: html, text
• finalize this 7-way description document
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 29, context: html, text, full: html, text
• adding Zebra finch to the list of species
  • src/hg/makeDb/trackDb/birds/geoFor1/cons7way.html - lines changed 1, context: html, text, full: html, text
• adding geoFor to the xenoRefGene definitions
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• done with hgPal downloads for 7-way
  • src/hg/makeDb/doc/geoFor1.txt - lines changed 113, context: html, text, full: html, text
• completed upstream maf files
  • src/hg/makeDb/doc/geoFor1.txt - lines changed 9, context: html, text, full: html, text
• adding upstream definition to geoFor1
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• add correct search spec for gold table
  • src/hg/makeDb/trackDb/birds/geoFor1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• add gold table search rule
  • src/hg/makeDb/trackDb/birds/melUnd1/trackDb.ra - lines changed 8, context: html, text, full: html, text
• add Medium ground finch to the matrix notes
  • src/hg/makeDb/trackDb/human/hg19/hg19vertChainNet.html - lines changed 4, context: html, text, full: html, text
• adding geoFor1 to the Vertebrate chain net grouping
  • src/hg/makeDb/trackDb/mouse/mm10/trackDb.vertebrateChainNet.ra - lines changed 19, context: html, text, full: html, text