Commits for braney

v272_preview to v272_preview2 (2012-08-14 to 2012-08-21) v272

• add CCDS track to mm10
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• fix #8796. Hub tracks don't have a tdb in the track hash, so we shouldn't expect to find one there.
  • src/hg/lib/hdb.c - lines changed 5, context: html, text, full: html, text
• fix up makefile to build libraries before executables with target install-rr
  • src/hg/makeDb/genbank/makefile - lines changed 1, context: html, text, full: html, text
• fixed #8834 by querying only part of the chrom to get ten items for schema
  • src/hg/hgTables/bigBed.c - lines changed 58, context: html, text, full: html, text
• use ensembl genes instead of refGene for the upstream files because there's no UTR defined for the refGene models
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 2, context: html, text, full: html, text
• more changes to support UCSC genes (#7045). Added script to build new proteome database, fixed some utilities used in the building of that database, removed dependency on gdbPdb table in hgcentral (now it just uses the most recent proteome database rather than having a proteins database per assembly)
  • src/hg/lib/hdb.c - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/doc/proteins/120806.txt - lines changed 693, context: html, text, full: html, text
  • src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes13.csh - lines changed 4, context: html, text, full: html, text
  • src/hg/protein/pbHgnc/pbHgnc.c - lines changed 30, context: html, text, full: html, text
  • src/hg/protein/spToSpXref2/spToSpXref2.c - lines changed 10, context: html, text, full: html, text