c8174ac2c2237b3f8f24766ca50348487ba94fa7
galt
  Wed Aug 15 14:48:47 2012 -0700
bedPileUps is a new utility for finding where how many pileups there are in input including the locations and the sizes, with a summary maximum and its location, plus average pileup size.  Matching is on chrom/start/end with name as an additional option for uniqueness.
diff --git src/utils/makefile src/utils/makefile
index 90b756a..3428b05 100644
--- src/utils/makefile
+++ src/utils/makefile
@@ -48,30 +48,31 @@
         lodToBedScore \
 	mkMafFrames.pl
 
 # List of directories to build
 USE_DIRS = $(DIRS)
 
 DIRS = \
 	aNotB \
 	addCols \
 	ave \
 	aveCols \
 	bedClip \
 	bedCommonRegions \
 	bedGeneParts \
 	bedGraphToBigWig \
+	bedPileUps \
 	bedRemoveOverlap \
 	bedRestrictToPositions \
 	bedToBigBed \
 	bigBedInfo \
 	bigBedSummary \
 	bigBedToBed \
 	bigWigAverageOverBed \
 	bigWigInfo \
 	bigWigMerge \
 	bigWigSummary \
 	bigWigToBedGraph \
 	bigWigToWig \
 	calc \
 	catDir \
 	catUncomment \