0ab46e67da0fc5e673e3a856100ae79890c12e4a
markd
  Sat Aug 18 14:05:12 2012 -0700
handled turning GFF3 transcript records into non-coding genes
diff --git src/lib/gff3.c src/lib/gff3.c
index 2aab05f..a8288f0 100644
--- src/lib/gff3.c
+++ src/lib/gff3.c
@@ -36,30 +36,31 @@
 char *gff3AttrGap = "Gap";
 char *gff3AttrDerivesFrom = "Derives_from";
 char *gff3AttrNote = "Note";
 char *gff3AttrDbxref = "Dbxref";
 char *gff3AttrOntologyTerm = "Ontology_term";
 
 /* commonly used features names */
 char *gff3FeatGene = "gene";
 char *gff3FeatMRna = "mRNA";
 char *gff3FeatExon = "exon";
 char *gff3FeatCDS = "CDS";
 char *gff3FeatThreePrimeUTR = "three_prime_UTR";
 char *gff3FeatFivePrimeUTR = "five_prime_UTR";
 char *gff3FeatStartCodon = "start_codon";
 char *gff3FeatStopCodon = "stop_codon";
+char *gff3FeatTranscript = "transcript";
 
 static bool gff3FileStopDueToErrors(struct gff3File *g3f)
 /* determine if we should stop due to the number of errors */
 {
 return g3f->errCnt > g3f->maxErr;
 }
 
 static void gff3FileErr(struct gff3File *g3f, char *format, ...)
 #if defined(__GNUC__)
 __attribute__((format(printf, 2, 3)))
 #endif
 ;
 
 static void gff3AnnErr(struct gff3Ann *g3a, char *format, ...)
 #if defined(__GNUC__)