File Changes for braney

v273_preview2 to v273_base (2012-09-11 to 2012-09-18) v273

• src/hg/hgGene/hgGene.c
  • lines changed 30, context: html, text, full: html, text
    move things around in the printf in hgGene that prints out the transcript start and stop, and CDS start and stop (#8249)
  • lines changed 3, context: html, text, full: html, text
    more twiddling of the info about a gene (#8249)
  • lines changed 3, context: html, text, full: html, text
    more twiddling (#8249)
• src/hg/makeDb/doc/ucscGenes/mm10.ucscGenes13.csh
  • lines changed 38, context: html, text, full: html, text
    rebuilt to fix up kg5ToKg6 (#7045)
• src/hg/makeDb/genbank/etc/euronode-copy
  • lines changed 1, context: html, text, full: html, text
    take off verbose flag for initial rsync
• src/hg/makeDb/genbank/src/align/gbAlignFinish
  • lines changed 1, context: html, text, full: html, text
    fix problems with duplicate lines in refGene due to overlapping blat regions (#9008)
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 9, context: html, text, full: html, text
    add track of Pfam domains in UCSC genes (#8968)
• src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
  • lines changed 10, context: html, text, full: html, text
    add a track that has the lifted over mm9 ucsc genes (#7045)
• src/lib/twoBit.c
  • lines changed 5, context: html, text, full: html, text
    eliminated pointless check for .2bit suffix in file name. There's checks elsewhere for file signature (#9095)
  • lines changed 36, context: html, text, full: html, text
    fix twoBit recognition logic (#9095). Look for signature in file rather than .2bit suffix
• src/utils/twoBitToFa/twoBitToFa.c
  • lines changed 4, context: html, text, full: html, text
    one more fix for this