Commits for cricket

v273_preview2 to v273_base (2012-09-11 to 2012-09-18) v273

• Fixing plurality of data
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.release2.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.html - lines changed 1, context: html, text, full: html, text
• Removing a duplicate file and adding back in missing md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 316, context: html, text, full: html, text
• changing the names of the spikeins
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 65, context: html, text, full: html, text
• Changing the V2 names of the protocols that were never V2, dropping the protocol none
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 452, context: html, text, full: html, text
• A few more protocols that should not have been V2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 10, context: html, text, full: html, text
• This is cluttering up our metadata dir
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProtFasp.obsolete.ra - lines changed 40, context: html, text, full: html, text
• Adding accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 35, context: html, text, full: html, text
• Preparing for release: Adding a notes file, fixing the defualts and the labels, adding release notes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release3.notes - lines changed 4363, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 1305, context: html, text, full: html, text
• Trying to clear out the plethora of versions of this file
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch.ra - lines changed 12, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch2.html - lines changed 139, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.patch2.ra - lines changed 13, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.html - lines changed 137, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.release2.ra - lines changed 12, context: html, text, full: html, text
• Adding geo accession column
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
• Standardizing GeneCard: and commenting out trouble antibodies that are not used
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 86, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 478, context: html, text, full: html, text
• Commenting out a V1 that has been replaced
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 34, context: html, text, full: html, text
• Adding geo column
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.release2.ra - lines changed 1, context: html, text, full: html, text
• Trying to clear the issues with new and revoked
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release3.notes - lines changed 4174, context: html, text, full: html, text
• removing the readType for the composite
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 1, context: html, text, full: html, text
• cleaning up the target termId's, commenting out trouble ones that we do not use in the mdb
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 90, context: html, text, full: html, text
• Fixing the notes files to still have the two docs that are new and revoked
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeCshlLongRnaSeq.release3.notes - lines changed 4174, context: html, text, full: html, text