File Changes for galt

v273_preview2 to v273_base (2012-09-11 to 2012-09-18) v273

• src/hg/hgCustom/hgCustom.c
  • lines changed 1, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 1, context: html, text, full: html, text
    oops, missed including net.h in hgCustom to support setConnFailuresEnabled
  • lines changed 1, context: html, text, full: html, text
    turn setConnFailuresEnabled for v273, do not want to many changes at once
• src/hg/hgHubConnect/hgHubConnect.c
  • lines changed 4, context: html, text, full: html, text
    fixing problems related to cut and paste of url which was picking up trailing blanks - now by removing trailing newline before closing-td and adding jquery trim function we prevent those blanks and remove them even if they somehow get added by some other cause.
• src/hg/hgTracks/bigBedTrack.c
  • lines changed 1, context: html, text, full: html, text
    Revert "removing arbitrary limit on bigBed -- let users have more control"
    This reverts commit e4aec0c172a44c018885a6b9f33b7d65a8b8047b.
    
    I guess we are back to having a limit, but it will be increased from 500 to 3000
    
  • lines changed 1, context: html, text, full: html, text
    oops should use min instead of max
• src/hg/hgTracks/hgTracks.h
  • lines changed 2, context: html, text, full: html, text
    Revert "removing arbitrary limit on bigBed -- let users have more control"
    This reverts commit e4aec0c172a44c018885a6b9f33b7d65a8b8047b.
    
    I guess we are back to having a limit, but it will be increased from 500 to 3000
    
  • lines changed 1, context: html, text, full: html, text
    increasing BIGBEDMAXIMUMITEMS from 500 to 3000
• src/hg/hgTracks/mainMain.c
  • lines changed 2, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 1, context: html, text, full: html, text
    turn setConnFailuresEnabled for v273, do not want to many changes at once
• src/hg/hgTracks/renderMain.c
  • lines changed 2, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 1, context: html, text, full: html, text
    turn setConnFailuresEnabled for v273, do not want to many changes at once
• src/hg/hgc/hgc.c
  • lines changed 8, context: html, text, full: html, text
    adjust chromosome name from cosmicraw table for output
• src/inc/net.h
  • lines changed 17, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 2, context: html, text, full: html, text
    making tcp connect timeout be a define constant
• src/lib/https.c
  • lines changed 10, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 4, context: html, text, full: html, text
    making tcp connect timeout be a define constant
• src/lib/net.c
  • lines changed 135, context: html, text, full: html, text
    add tracking of connect-failures to hgCustom and hgTracks which may have many bigDataUrls pointing to the same failing site; also fixed a bug in the timeout handling of EINTR
  • lines changed 1, context: html, text, full: html, text
    making tcp connect timeout be a define constant