265c822fad7002219f5639b8bd3c7f40a9445188
kent
  Tue Sep 11 11:15:14 2012 -0700
Removing pairFile command line parameter since not yet using it.  Improving usage message.
diff --git src/kehayden/alphaChain/doIt src/kehayden/alphaChain/doIt
index 80e6e73..4fb62d0 100755
--- src/kehayden/alphaChain/doIt
+++ src/kehayden/alphaChain/doIt
@@ -1 +1,2 @@
-alphaChain DYZ3_alphaChain.txt test.out chain=test.chain afterChain=test.after outSize=10000 seed=0
+alphaChain DYZ3_alphaChain.txt DYZ3_alphaChain_monOrder.txt test.out chain=test.chain afterChain=test.after outSize=10000 seed=0
+