23b8e0d0de43c6d10bb2931e9c3f10ea45799445
galt
  Mon Sep 10 15:27:01 2012 -0700
fixing Cosmic genome position to add chr prefix to chromosome name since data came from Ensembl
diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c
index 1e7c791..264cec7 100644
--- src/hg/hgc/hgc.c
+++ src/hg/hgc/hgc.c
@@ -9269,31 +9269,31 @@
     mutated_samples     = row[ii];ii++;
     examined_samples    = row[ii];ii++;
     mut_freq            = row[ii];ii++;
 
     chp = strstr(itemName, "COSM")+strlen("COSM");
     printf("<B>COSMIC ID:</B> %s", chp);
 
     printf(" (click <A HREF=\"%s&id=%s\" TARGET=_BLANK>here</A> for more details at COSMIC site)\n", url, chp);
 
     // Embed URL to COSMIC site per COSMICT request.
     printf("<BR><B>Source:</B> ");
     printf("<A HREF=\"http://www.sanger.ac.uk/cosmic/\" TARGET=_BLANK>%s</A>\n", source);
 
     printf("<BR><B>Gene Name:</B> %s\n", gene_name);
     printf("<BR><B>Accession Number:</B> %s\n", accession_number);
-    printf("<BR><B>Genomic Position:</B> %s:%s-%s", chromosome, grch37_start, grch37_stop);
+    printf("<BR><B>Genomic Position:</B> chr%s:%s-%s", chromosome, grch37_start, grch37_stop);
     printf("<BR><B>Mutation Description:</B> %s\n", mut_description);
     printf("<BR><B>Mutation Syntax CDS:</B> %s\n", mut_syntax_cds);
     printf("<BR><B>Mutation Syntax AA:</B> %s\n", mut_syntax_aa);
     printf("<BR><B>Mutation NT:</B> %s\n", mut_nt);
     printf("<BR><B>Mutation AA:</B> %s\n", mut_aa);
 
     safef(query2, sizeof(query2),
       "select count(tumour_site) from cosmicRaw where cosmic_mutation_id='%s'", itemName);
 
     sr2 = sqlMustGetResult(conn2, query2);
     row2 = sqlNextRow(sr2);
     if ((atoi(row2[0])) > 1)
         {
 	multipleTumorSites = TRUE;
         indentString = indent1;