ed84782073f23cedfa41596e1e6de157fb84270a rhead Mon Oct 1 18:19:28 2012 -0700 Changed requirement to run on hgwdev to capability to run on either hgwdev or hgwbeta. diff --git src/utils/qa/findOrg.csh src/utils/qa/findOrg.csh index 09ce981..636b788 100755 --- src/utils/qa/findOrg.csh +++ src/utils/qa/findOrg.csh @@ -1,45 +1,50 @@ #!/bin/tcsh source `which qaConfig.csh` ################################ # # 03-31-2008 # Ann Zweig # # Find the organism name given the assembly name # ################################ set date="" if ( $#argv < 1 | $#argv > 2 ) then echo echo " Finds the organism name given the assembly name" echo " usage: assemblyName [date]" echo " will accept name with or without digit" echo " use 'date' to also retrieve assembly date" echo " (e.g. 'ornAna2' or 'ornAna')" echo exit 1 else set db=$argv[1] endif if ( $#argv == 2 ) then set date=$argv[2] if ( $date != "date" ) then echo "\n error. use the word 'date' as second parameter\n" exit 1 endif set date=", description" endif -if ( "$HOST" != "hgwdev" ) then - echo "\n ERROR: you must run this script on dev!\n" +set host=`uname -n` +if ( "$host" == hgwdev ) then + set centralDb=hgcentraltest +else if ( "$host" == hgwbeta ) then + set centralDb=hgcentralbeta +else + echo "\n error. Unknown host '$host'. Can only be run from hgwdev or hgwbeta." exit 1 endif hgsql -t -e "SELECT name, organism $date FROM dbDb WHERE NAME LIKE '$db%' \ - ORDER BY name" hgcentraltest | tail -n+3 + ORDER BY name" $centralDb | tail -n+3 exit 0