e965f818e4a97df1b61a718e80cd56054eb628e6
braney
  Fri Sep 21 12:51:22 2012 -0700
move decipher directory to be level with omim directory. (#8840)
diff --git src/utils/decipher/buildDecipher src/utils/decipher/buildDecipher
deleted file mode 100755
index 76a4806..0000000
--- src/utils/decipher/buildDecipher
+++ /dev/null
@@ -1,34 +0,0 @@
-# get raw data file from DECIPHER
-
-#cp $1  decipherRaw.txt -p
-cat $1|grep -v '#' >  decipherRaw.txt 
-
-hgsql hg19 -e 'delete from decipherRaw'
-
-hgsql hg19 -e \
-'load data local infile "decipherRaw.txt" into table decipherRaw'
-
-hgsql hg19 -N -e 'select "chr", chr, start-1, end, id from decipherRaw ' |\
-sed -e 's/chr\t/chr/' |sort -u>j.tmp
-
-cp j.tmp decipher.bed
-# fix some out of range of entries
-#cat j.tmp|sed -e 's/243000000/242951149/' |\
-#sed -e 's/115090019/114142980/' >decipher.bed
-#rm j.tmp
-
-# Load decipher table
-hgLoadBed hg19 decipher decipher.bed
-
-# Create knownToDecipher table
-hgMapToGene -all hg19 decipher knownGene knownToDecipher
-
-# Create knownCanonToDecipher table
-
-hgsql hg19 -N -e \
-'select d.* from knownToDecipher d, knownCanonical c where c.transcript=d.name' >knownCanonToDecipher.tab
-
-hgsql hg19 -e 'delete from knownCanonToDecipher'
-hgsql hg19 -e 'load data local infile "knownCanonToDecipher.tab" into table knownCanonToDecipher'
-
-