Commits for cricket

v273_base to v274_preview (2012-09-18 to 2012-09-25) v274

• Adding targetClass where it is transitive, removing some old comments, dealing with capitalization for GeneCard listings and cleaning up urls
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 93, context: html, text, full: html, text
• Removing unused antibodies
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 176, context: html, text, full: html, text
• Qa fixes http://redmine.soe.ucsc.edu/issues/7907#note-28
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 4, context: html, text, full: html, text
• Adding back a line that was accidentally erased
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Trying to standardize on the Peptide mapping views
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 13, context: html, text, full: html, text
• Adding in the geoAccession column
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.release2.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHist.release2.ra - lines changed 1, context: html, text, full: html, text
• Updating the targets where there is an obvious capilatization or dash issue, or there is an obvious preference in HGNC. This should only be the target label.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 56, context: html, text, full: html, text
• Standardizing on the vendor names
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 200, context: html, text, full: html, text
• Fixed spelling error in the fileSortOrder
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromChip.release2.ra - lines changed 1, context: html, text, full: html, text
• Adding the GEO Accession column
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.release3.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeCaltechRnaSeq.release1.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodePsuDnase.ra - lines changed 1, context: html, text, full: html, text
• This is replaced by wgEncodeHaibMethylWgbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibBisulfate.ra - lines changed 229, context: html, text, full: html, text
• Adding column for GEO accessions
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• Adding notes about the 107c versus 105C confusion
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 14, context: html, text, full: html, text
• Adding the md5sum back for the missing file
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 2, context: html, text, full: html, text
• Fixing long labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 19, context: html, text, full: html, text
• Removing underbars in the label
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 10, context: html, text, full: html, text
• Adding greater thans and fixing sanitation of emails
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 6, context: html, text, full: html, text
• Trying to rearrange the contacts list
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 13, context: html, text, full: html, text
• Adding in the description of the views and changing the score filters at Katrina s request
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.html - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProtGenc.ra - lines changed 4, context: html, text, full: html, text
• Fixing typos found in ticket 9113
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text