Commits for cricket

v274_preview to v274_preview2 (2012-09-25 to 2012-10-02) v274

• Fixing the default tracks
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeUwChIPSeq.ra - lines changed 2, context: html, text, full: html, text
• Fixing the defualts
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCshlLongRnaSeq.ra - lines changed 9, context: html, text, full: html, text
• Short label and defualts
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.ra - lines changed 38, context: html, text, full: html, text
• Fixes from ticket 7907 note 52
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 28, context: html, text, full: html, text
• Something happened with an md5sum. I think someone must have unzipped the file
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 2, context: html, text, full: html, text
• Adding in seqPlatform info
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 17, context: html, text, full: html, text
• Adding the geo accession column
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra - lines changed 1, context: html, text, full: html, text
• fixing the gingeras email
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.release3.html - lines changed 3, context: html, text, full: html, text
• Adding in the protocol docs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 261, context: html, text, full: html, text
• Getting the file name extensions correct
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 11, context: html, text, full: html, text
• Adding md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 11, context: html, text, full: html, text
• Patching the fix to take out the commas in the term names
  • src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 5, context: html, text, full: html, text
• Changing small typos to clean up a diff for release1 and release2
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.release2.ra - lines changed 4, context: html, text, full: html, text
• Unstaging the metaData for the rejected track
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUchicagoTfbs.ra - lines changed 2856, context: html, text, full: html, text
• Adding the md5sums, the geoAccessions, and the bai filenames to the metadata since we are not having a release2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUchicagoTfbs.ra - lines changed 166, context: html, text, full: html, text
• Making the changes from release2 that we would like to leak. See http://redmine.soe.ucsc.edu/issues/5697#note-56
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUchicagoTfbs.ra - lines changed 33, context: html, text, full: html, text
• Changed the seqPlatform to have the terms instead of the labels. This brought up and issue for ones that had multiple platforms. See ticket 9210.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 808, context: html, text, full: html, text
• Adding as many of the document names for Tenebaum again, ticket 9159
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 9, context: html, text, full: html, text