3ddccd174261d84b45708e2818103cfff0cf3a30
kent
  Tue Sep 11 12:06:58 2012 -0700
Renaming and otherwise refactoring alphaChain program into alphaAsm.  Making it hold reads in a list for multiple passes.
diff --git src/kehayden/alphaAsm/doIt src/kehayden/alphaAsm/doIt
new file mode 100755
index 0000000..eef451c
--- /dev/null
+++ src/kehayden/alphaAsm/doIt
@@ -0,0 +1,2 @@
+alphaAsm DYZ3_alphaChain.txt DYZ3_alphaChain_monOrder.txt test.out chain=test.chain afterChain=test.after outSize=10000 seed=0
+