084578b135956fb5fd981acfad2bd929bd8f0114
hiram
  Fri Oct 19 11:50:10 2012 -0700
update to handle mm10 correctly
diff --git src/utils/ncbi/cytoBandVerify.pl src/utils/ncbi/cytoBandVerify.pl
index 5c7abc8..86c82a4 100755
--- src/utils/ncbi/cytoBandVerify.pl
+++ src/utils/ncbi/cytoBandVerify.pl
@@ -29,21 +29,22 @@
 
 while (my $line = <FH>) {
     chomp $line;
     my ($chr, $start, $end, $name, $band) = split('\s+', $line);
     die "start < 0 at $line" if ($start < 0);
     die "end > $chromInfo{$chr} at $line" if ($end > $chromInfo{$chr});
     $zeros{$chr} = 1 if (0 == $start);
     $ends{$chr} = 1 if ($chromInfo{$chr} == $end);
 }
 
 my $chrCount = 0;
 #  all zeros and ends covered ?
 foreach my $chr (sort (keys %chromInfo)) {
     next if ($chr =~ m/random/);
     next if ($chr =~ m/chrM/);
+    next if ($chr =~ m/chrUn/);
     die "no zero coordinate on chrom $chr" if (!exists($zeros{$chr}));
     die "no end coordinate on chrom $chr" if (!exists($ends{$chr}));
     ++$chrCount;
 }
 
 print "everything checks out OK on $chrCount chroms\n";