cc724e307e7912fb03517c142e28d7bc2723f5e4 angie Fri Nov 16 16:25:12 2012 -0800 Track #9401 (DGV update): loaded Nov. '12 data. diff --git src/hg/hgc/hgc.c src/hg/hgc/hgc.c index 5e5fa74..aca2391 100644 --- src/hg/hgc/hgc.c +++ src/hg/hgc/hgc.c @@ -16039,31 +16039,31 @@ printTrackHtml(tdb); } void doDgv(struct trackDb *tdb, char *id) /* Details for Database of Genomic Variants (updated superset of cnp*). */ { struct dgv dgv; struct sqlConnection *conn = hAllocConn(database); struct sqlResult *sr; char **row; char query[512]; int rowOffset = hOffsetPastBin(database, seqName, tdb->table); genericHeader(tdb, id); printCustomUrl(tdb, id, FALSE); -safef(query, sizeof(query), "select * from dgv where name = '%s'", id); +safef(query, sizeof(query), "select * from %s where name = '%s'", tdb->table, id); sr = sqlGetResult(conn, query); while ((row = sqlNextRow(sr)) != NULL) { dgvStaticLoad(row+rowOffset, &dgv); if (dgv.chromStart != dgv.thickStart || (dgv.chromEnd != dgv.thickEnd && dgv.thickEnd != dgv.chromStart)) { printf("<B>Variant Position:</B> " "<A HREF=\"%s&db=%s&position=%s%%3A%d-%d\">%s:%d-%d</A><BR>\n", hgTracksPathAndSettings(), database, dgv.chrom, dgv.thickStart+1, dgv.thickEnd, dgv.chrom, dgv.thickStart+1, dgv.thickEnd); printBand(dgv.chrom, dgv.thickStart, dgv.thickEnd, FALSE); printf("<B>Variant Genomic Size:</B> %d<BR>\n", dgv.thickEnd - dgv.thickStart); @@ -24673,31 +24673,31 @@ { doCnpSharp(tdb, item); } else if (sameWord(table, "cnpSharp2")) { doCnpSharp2(tdb, item); } else if (sameWord(table, "delHinds2")) { doDelHinds2(tdb, item); } else if (sameWord(table, "delConrad2")) { doDelConrad2(tdb, item); } -else if (sameWord(table, "dgv")) +else if (sameWord(table, "dgv") || sameWord(table, "dgvBeta")) { doDgv(tdb, item); } else if (sameWord(table, "affy120K")) { doAffy120K(tdb, item); } else if (sameWord(table, "affy10K")) { doAffy10K(tdb, item); } else if (sameWord(table, "uniGene_2") || sameWord(table, "uniGene")) { doSageDataDisp(table, item, tdb); }