cc724e307e7912fb03517c142e28d7bc2723f5e4 angie Fri Nov 16 16:25:12 2012 -0800 Track #9401 (DGV update): loaded Nov. '12 data. diff --git src/hg/lib/dgv.sql src/hg/lib/dgv.sql index 524d40d..f26e2e2 100644 --- src/hg/lib/dgv.sql +++ src/hg/lib/dgv.sql @@ -1,27 +1,27 @@ # dgv.sql was originally generated by the autoSql program, which also # generated dgv.c and dgv.h. This creates the database representation of # an object which can be loaded and saved from RAM in a fairly # automatic way. #Database of Genomic Variants CREATE TABLE dgv ( bin smallint not null, # Bin number for browser speedup chrom varchar(255) not null, # Reference sequence chromosome or scaffold chromStart int unsigned not null, # Start position in chromosome chromEnd int unsigned not null, # End position in chromosome name varchar(255) not null, # Name of item score int unsigned not null, # Score from 0-1000 strand char(1) not null, # + or - thickStart int unsigned not null, # Start of where display should be thick (start codon) thickEnd int unsigned not null, # End of where display should be thick (stop codon) itemRgb int unsigned not null, # Item R,G,B color. - landmark varchar(255) not null, # Genomic marker near the variation locus + landmark longblob not null, # Genomic marker near the variation locus varType varchar(255) not null, # Type of variation reference varchar(255) not null, # Literature reference for the study that included this variant pubMedId int unsigned not null, # For linking to pubMed abstract of reference - method varchar(255) not null, # Brief description of method/platform + method longblob not null, # Brief description of method/platform sample longblob not null, # Description of sample population for the study #Indices INDEX (chrom,bin), - PRIMARY KEY (name) + INDEX (name) );