File Changes for hiram

v275_base to v276_preview (2012-10-30 to 2012-11-06) v276

• src/hg/makeDb/doc/bosTau7.txt
  • lines changed 61, context: html, text, full: html, text
    cow v. rhino lastz done
• src/hg/makeDb/doc/cerSim1.txt
  • lines changed 23, context: html, text, full: html, text
    completed Lamprey petMar2 and Rhino cerSim1 lastz to Opossum
  • lines changed 24, context: html, text, full: html, text
    cow v. rhino lastz done
• src/hg/makeDb/doc/geoFor1.txt
  • lines changed 16, context: html, text, full: html, text
    revisit the phyloP histogram graph
• src/hg/makeDb/doc/monDom5.txt
  • lines changed 141, context: html, text, full: html, text
    completed Lamprey petMar2 and Rhino cerSim1 lastz to Opossum
• src/hg/makeDb/doc/petMar2.txt
  • lines changed 220, context: html, text, full: html, text
    starting 7-way alignment
  • lines changed 239, context: html, text, full: html, text
    gap and frame annotation added to the 7-way
  • lines changed 140, context: html, text, full: html, text
    phylo tree estimate done from the 7-way maf file
  • lines changed 277, context: html, text, full: html, text
    done with phastCons7way
  • lines changed 187, context: html, text, full: html, text
    done with phyloP7way
  • lines changed 13, context: html, text, full: html, text
    correct histogram of the phyloP data
• src/hg/makeDb/doc/rn5.txt
  • lines changed 16, context: html, text, full: html, text
    liftOver to rn4 done
• src/hg/makeDb/trackDb/chicken/trackDb.chainNet.ra
  • lines changed 6, context: html, text, full: html, text
    fixup petMar2 and geoFor1 priority overrides
• src/hg/makeDb/trackDb/lamprey/petMar2/cons7way.html
  • lines changed 388, context: html, text, full: html, text
    initial display of the 7-way conservation
• src/hg/makeDb/trackDb/lamprey/petMar2/trackDb.7way.ra
  • lines changed 103, context: html, text, full: html, text
    initial display of the 7-way conservation
  • lines changed 4, context: html, text, full: html, text
    setting the phyloP viewLimits
• src/hg/makeDb/trackDb/lamprey/petMar2/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    initial display of the 7-way conservation
• src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra
  • lines changed 19, context: html, text, full: html, text
    tuning up the chain net tracks to be accurate locations and parameters
• src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    correct priority for petMar2 chain net
• src/hg/makeDb/trackDb/opossum/trackDb.chainNet.ra
  • lines changed 2, context: html, text, full: html, text
    correct priority for petMar2 chain net