f6eb88c406907e8453ddeeaaa84fb53439ac5d61
chinhli
  Tue Nov 6 15:49:25 2012 -0800
Bug #9548 hg/makeDb/hgWiggle: No such file or directory during makeUserApp.csh called by ./doHgDownloadUtils.csh.
diff --git src/makefile src/makefile
index 3bd2769..054ff09 100644
--- src/makefile
+++ src/makefile
@@ -59,44 +59,47 @@
         bigBedInfo bigBedSummary bigBedToBed bigWigAverageOverBed  \
 	bigWigInfo bigWigSummary bigWigToBedGraph bigWigToWig\
 	faCount faFrag faOneRecord faPolyASizes faRandomize faSize \
 	faSomeRecords faToNib \
 	faToTwoBit htmlCheck nibFrag paraFetch paraSync sizeof stringify \
 	textHistogram twoBitDup twoBitInfo twoBitToFa userApps wigCorrelate wigToBigWig
 
 HG_APPLIST = bedSort liftUp liftOver bedItemOverlapCount encode/validateFiles \
 	 featureBits ratStuff/mafsInRegion ratStuff/mafSpeciesSubset \
 	 pslCDnaFilter genePredToGtf pslPretty pslReps pslSort 
 
 
 HG_UTILS_APPLIST = bedExtendRanges gff3ToGenePred gtfToGenePred \
 	hubCheck overlapSelect makeTableList
 
-HG_LOAD_APPLIST = hgWiggle hgGcPercent
+HG_HGWIGGLE_APP = hgWiggle
 
-BLAT_APPLIST = blat gfClient gfServer 
+HG_LOAD_APPLIST = hgGcPercent
 
 userApps: topLibs hgLib
 	@for P in ${UTILS_APPLIST}; do \
 	    ( cd utils/$${P} && echo utils/$${P} && ${MAKE} ) ; \
 	done
 	@for P in ${HG_APPLIST}; do \
 	    ( cd hg/$${P} && echo hg/$${P} && ${MAKE} ) ; \
 	done
 	@for P in ${HG_UTILS_APPLIST}; do \
 	    ( cd hg/utils/$${P} && echo hg/utils/$${P} && ${MAKE} ) ; \
 	done
+	@for P in ${HG_HGWIGGLE_APP}; do \
+	    ( cd hg/makeDb/hgLoadWiggle && echo hg/makeDb/hgLoadWiggle && ${MAKE} $${P} ) ; \
+	done
 	@for P in ${HG_LOAD_APPLIST}; do \
 	    ( cd hg/makeDb/$${P} && echo hg/makeDb/$${P} && ${MAKE} $${P} ) ; \
 	done
 	@for P in ${BLAT_APPLIST}; do \
 	    ( cd $${P} && echo $${P} && ${MAKE} ) ; \
 	done
 
 clean:
 	@for D in ${DIRS} x; do \
             if test "$$D" != "x" ; then \
                 ( cd $$D && echo $$D && ${MAKE} clean ) ;\
                 x=$$? ; if [ $$x -ne 0 ]; then exit $$x ; fi \
             fi ;\
 	done
 	cd lib && ${MAKE} clean