481ed3546001933ed4ceb889fc34696e68bef234 angie Fri Dec 14 17:05:55 2012 -0800 Feature #6152 (Variant Annotation Integrator): added annoStreamBigWigand moved up annoGrateWig from hg/lib to lib. Tested with comparison to hgTables intersection, bitwise. Output is not identical because hgTables merges adjacent bases and splits on value changes, while annoGrator prints original item and comma-sep list of per-base values. diff --git src/inc/annoGrateWig.h src/inc/annoGrateWig.h new file mode 100644 index 0000000..3a8c47a --- /dev/null +++ src/inc/annoGrateWig.h @@ -0,0 +1,14 @@ +/* annoGrateWig -- subclass of annoGrator for bigWig or wiggle data */ + +#ifndef ANNOGRATEWIG_H +#define ANNOGRATEWIG_H + +#include "annoGrator.h" + +struct annoGrator *annoGrateWigNew(struct annoStreamer *wigSource); +/* Create an annoGrator subclass for source with rowType == arWig. */ + +struct annoGrator *annoGrateBigWigNew(char *fileOrUrl); +/* Create an annoGrator subclass for bigWig file or URL. */ + +#endif//ndef ANNOGRATEWIG_H