Commits for brianlee
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v276_base to v277_preview (2012-11-20 to 2012-12-03) v277
- Copying alpha/cv.ra to beta/cv.ra RM#9480
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 153, context: html, text, full: html, text
- Adding GEO accession information for beta/public on ENCODE DukeAffyExon and HaibMethylRrbs per RM#9359
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeDukeAffyExon.ra - lines changed 220, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibMethylRrbs.ra - lines changed 191, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeDukeAffyExon.ra - lines changed 220, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibMethylRrbs.ra - lines changed 191, context: html, text, full: html, text
- Removing from wgEncodeUwDnase 10 occurances of GSM per RM#9564
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwDnase.ra - lines changed 11, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwDnase.ra - lines changed 11, context: html, text, full: html, text
- Removing GEO Sample Accession numbers for CaltechRnaSeq, HaibTfbs, and OpenChromDnase per RM#9564
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCaltechRnaSeq.ra - lines changed 89, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeHaibTfbs.ra - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromDnase.ra - lines changed 15, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCaltechRnaSeq.ra - lines changed 89, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeHaibTfbs.ra - lines changed 25, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromDnase.ra - lines changed 15, context: html, text, full: html, text
- Dropping some Geo Sample Accession numbers and changing some md5sums RM#9359, RM9564.
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwHistone.ra - lines changed 51, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwHistone.ra - lines changed 51, context: html, text, full: html, text
- Revoking status of some metaDb files for CSHL Long RNA-seq RM#9521
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeCshlLongRnaSeq.ra - lines changed 14, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeCshlLongRnaSeq.ra - lines changed 14, context: html, text, full: html, text
- Making changes to FAQ about naming of releases referencing gggSss# format, also updated links for new Blue Bar organization.
- src/hg/htdocs/FAQ/FAQlink.html - lines changed 3, context: html, text, full: html, text
- src/hg/htdocs/FAQ/FAQreleases.html - lines changed 7, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 1, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgTablesHelp.html - lines changed 2, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 16, context: html, text, full: html, text
- Adding Geo Sample Accession numbers fot FSU Repli Chip per RM#9359
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeFsuRepliChip.ra - lines changed 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeFsuRepliChip.ra - lines changed 9, context: html, text, full: html, text
- Making edits based on feedback from Bob in adding info about names of assemblies and new pulldown menus
- src/hg/htdocs/FAQ/FAQlink.html - lines changed 1, context: html, text, full: html, text
- src/hg/htdocs/FAQ/FAQreleases.html - lines changed 2, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgSessionHelp.html - lines changed 1, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgTablesHelp.html - lines changed 1, context: html, text, full: html, text
- src/hg/htdocs/goldenPath/help/hgTracksHelp.html - lines changed 10, context: html, text, full: html, text
- Adding protocol documents for cell lines for Gilbert Lab: L1210, ES-EM5...25,IPS...4,IPS...5
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
- Adding GEO numbers to UWAffyExonArray RM#9359
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeUwAffyExonArray.ra - lines changed 42, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeUwAffyExonArray.ra - lines changed 42, context: html, text, full: html, text
- Adding protocol links for EpiSC-7 and EpiSC-5 for Gilbert lab, RM9226
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
- Copying alpha/cv.ra to beta, more accurate target descriptions and addition of protocols for cell lines in Gilbert lab
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 15, context: html, text, full: html, text
- Renaming validation files for H3K9me3 H3K4me3_(04-745) H3K4me1 H3K27me3_(39155) H3K36me3 antibodies that were pointing to files called human when in the validation document Western Blot was done on mice, so files and pointers changed to mouse per Cricket RM#9159, also fixing pointer to correct human_H3K9me3_ab8898_validation_Ren.pdf file
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
- Copying alpha/cv.ra to beta/cv.ra with changes for RM#9159, correcting validation file names from human to mouse for some antibodies
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 6, context: html, text, full: html, text
- Adding GEO numbers for mm9 wgEncodeFsu RepliChip RM#9359
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/beta/wgEncodeFsuRepliChip.ra - lines changed 28, context: html, text, full: html, text
- src/hg/makeDb/trackDb/mouse/mm9/metaDb/public/wgEncodeFsuRepliChip.ra - lines changed 28, context: html, text, full: html, text
- Adding validation document for antibody NCOR
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Copying alpha cv.ra to beta/cv.ra, adding validation doc for antibody NCOR
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 1, context: html, text, full: html, text
- Adding override line to have correct matrix values (default) for tenrec (echTel1) trackDb so matches output from getMatrixLines
- src/hg/makeDb/trackDb/tenrec/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
- Changing validation antibody document name to have hyphen in order to match pdf file so link works for SETDB1
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Correcting antibody validation link for SETDB1 to correct broken link on the RR
- src/hg/makeDb/trackDb/cv/beta/cv.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/cv/public/cv.ra - lines changed 1, context: html, text, full: html, text
- Revoking an antibody in Broad experiments in hg18 BroadChipSeq and hg19 BroadHistone RM9349#note-9 and 11
- src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeBroadChipSeq.ra - lines changed 19, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeBroadChipSeq.ra - lines changed 19, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeBroadHistone.ra - lines changed 27, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeBroadHistone.ra - lines changed 27, context: html, text, full: html, text
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