cc0e91626a781e4f74e7de5b69267300d00b75c7
luvina
  Tue Nov 27 16:25:28 2012 -0800
added news announcement for mm10 ucsc genes
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                         SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0></A>
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                   <P>
                   To receive announcements of new genome 
                   assembly releases, new software features, updates and 
                   training seminars by email, subscribe to the
                   <A HREF="http://groups.google.com/a/soe.ucsc.edu/group/genome-announce?hl=en"
                   TARGET=_blank>genome-announce</A> mailing list.</P>
 
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+	    	<font face="courier" size="3"><b>27 November 2012 -
+		New UCSC Genes Track Released for Mouse</b></font>
+		<p>
+		We're happy to announce the release of a new UCSC Genes 
+		track for the GRCm38/mm10 mouse Genome Browser.
+		</p>
+		<p>
+		The new release has 59,121 transcripts, compared with 
+		55,419 in the previous version on mm9. The total number 
+		of canonical genes has increased from 28,661 to 31,227. 
+		Comparing the new gene set with the previous version:
+		<p>
+		<ul>
+		<li>48,739 transcripts did not change between versions.
+		<li>423 transcripts were not carried forward to the new version.
+		<li>5,108 transcripts are "compatible" with those in the previous 
+		set, meaning that the two transcripts show consistent splicing.
+		<li>1,037 transcripts overlap with those in the previous set.
+		</ul>
+		<p>
+		More details about the new UCSC Genes track can be found on 
+		the <a href="http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg=mm10&g=knownGene"
+		>UCSC Genes track description page</a>.
+		<p>
+		Many thanks to Brian Raney, Jim Kent, and Luvina Guruvadoo 
+		for their work on this track!
+		</p>
+		<hr>
+	    <!-- start archives -->
 		<font face="courier" size="3"><b>14 November 2012 -
 ENCODE Tutorials Available at Open Helix</b></font>
 		<p>
                 OpenHelix and the UCSC Bioinformatics group have worked 
                 together to give everyone free access to the newly 
                 updated ENCODE tutorial until the end of February 2013.
 		</p>
 		<p>
                 The online tutorial suite teaches users how to access 
                 the ENCODE data in the UCSC Genome Browser.  The online 
                 tutorial, created by OpenHelix in conjunction with the 
                 UCSC Bioinformatics Group can be viewed for free at 
                 <A HREF = "http://www.openhelix.com/ENCODE2" TARGET =
                 _BLANK>http://www.openhelix.com/ENCODE2</A>.  The 
                 tutorial has been updated to reflect the recent changes 
@@ -47,40 +76,23 @@
 		</p>
 		<p>
                 The online narrated tutorial, which runs in just about 
                 any browser, can be viewed from beginning to end or 
                 navigated using chapters and forward and backward sliders. 
                 The approximately 60-minute tutorial explores ways 
                 to access the ENCODE data available within the UCSC Genome 
                 Browser. 
 		</p>
 		<p>
                 In addition to the tutorial, users can also access useful 
                 training materials including the animated PowerPoint slides 
                 used as a basis for the tutorial, suggested script for the 
                 slides, slide handouts, and exercises. 
 		</p>
-		<hr>
 
-	    <!-- start archives -->
-		<font face="courier" size="3"><b>17 September 2012 -
-Retiring the Proteome Browser </b></font>
-		<p>
-		We are announcing the imminent retirement of the Proteome Browser.
-		We introduced the Proteome Browser in 2003 to provide access to
-		protein-specific information independent of the genomic details
-		presented in the Genome Browser. Since then we've incorporated more
-		of this information in the UCSC Genes details page accessible from the
-		Genome Browser, and in the columns of the Gene Sorter. Since very few
-		people are still accessing the Proteome Browser, we've decided to
-		retire it to focus our work on these other two tools. Access to the
-		databases that supported the Proteome Browser (uniProt and proteome)
-		will still be available through the Table Browser and our public MySQL
-		server.
-		</p>
 
 ==> <a href="goldenPath/newsarch.html">News Archives</a>
 
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