df59be7a588a079f2edced09db6b09c0a07c65cf luvina Tue Nov 27 16:48:09 2012 -0800 Fixed link in announcement diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index e9f4980..a5007eb 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -1,98 +1,98 @@
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27 November 2012 - New UCSC Genes Track Released for Mouse

We're happy to announce the release of a new UCSC Genes track for the GRCm38/mm10 mouse Genome Browser.

The new release has 59,121 transcripts, compared with 55,419 in the previous version on mm9. The total number of canonical genes has increased from 28,661 to 31,227. Comparing the new gene set with the previous version:

  • 48,739 transcripts did not change between versions.
  • 423 transcripts were not carried forward to the new version.
  • 5,108 transcripts are "compatible" with those in the previous set, meaning that the two transcripts show consistent splicing.
  • 1,037 transcripts overlap with those in the previous set.

More details about the new UCSC Genes track can be found on - the UCSC Genes track description page.

Many thanks to Brian Raney, Jim Kent, and Luvina Guruvadoo for their work on this track!


14 November 2012 - ENCODE Tutorials Available at Open Helix

OpenHelix and the UCSC Bioinformatics group have worked together to give everyone free access to the newly updated ENCODE tutorial until the end of February 2013.

The online tutorial suite teaches users how to access the ENCODE data in the UCSC Genome Browser. The online tutorial, created by OpenHelix in conjunction with the UCSC Bioinformatics Group can be viewed for free at http://www.openhelix.com/ENCODE2. The tutorial has been updated to reflect the recent changes to the UCSC Genome Browser. The original tutorial is still available at http://www.openhelix.com/ENCODE.

The online narrated tutorial, which runs in just about any browser, can be viewed from beginning to end or navigated using chapters and forward and backward sliders. The approximately 60-minute tutorial explores ways to access the ENCODE data available within the UCSC Genome Browser.

In addition to the tutorial, users can also access useful training materials including the animated PowerPoint slides used as a basis for the tutorial, suggested script for the slides, slide handouts, and exercises.

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