Commits for max

v276_base to v277_preview (2012-11-20 to 2012-12-03) v277

• centromers html updates
  • src/hg/makeDb/trackDb/other/centromers1/description.html - lines changed 9, context: html, text, full: html, text
• added doNotCheckDuplicates option to makeGenomeDb.pl
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 12, context: html, text, full: html, text
• fixing a bug in makeGenomeDb.pl where .ra files are missing
  • src/hg/utils/automation/makeGenomeDb.pl - lines changed 2, context: html, text, full: html, text
• first checkin for repeats2 browser
  • src/hg/htdocs/images/RepeatMasker_Consensus_Sequences.png - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change shows no diff)
  • src/hg/makeDb/trackDb/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/description.html - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/gap.html - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/gold.html - lines changed 29, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/trackDb.ra - lines changed 10, context: html, text, full: html, text
• minor edits to track files
  • src/hg/makeDb/trackDb/other/repeats2/gap.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/gold.html - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/other/repeats2/trackDb.ra - lines changed 8, context: html, text, full: html, text
• added option to bedToPsl to keep original coordinates in target side of psl
  • src/hg/utils/bedToPsl/bedToPsl.c - lines changed 17, context: html, text, full: html, text
• correction to previous commit: I meant the query, not the target
  • src/hg/utils/bedToPsl/bedToPsl.c - lines changed 6, context: html, text, full: html, text
• bedToPsl: copying blocksizes for keepQuery option
  • src/hg/utils/bedToPsl/bedToPsl.c - lines changed 11, context: html, text, full: html, text
• tiny change to pslMap help message
  • src/hg/utils/pslMap/usage.txt - lines changed 3, context: html, text, full: html, text