53fd0f112ee6dea963b907965cf3b7eef4f89466
tdreszer
  Thu Nov 29 11:21:15 2012 -0800
Missed this one old define that is now gone.  Still redmine 7554.
diff --git src/hg/hgTracks/transcriptome.c src/hg/hgTracks/transcriptome.c
index c4a4218..448a89e 100644
--- src/hg/hgTracks/transcriptome.c
+++ src/hg/hgTracks/transcriptome.c
@@ -91,32 +91,30 @@
     }
 slReverse(&bedList);
 tg->items = bedList;
 }
 
     
 void affyTransfragsMethods(struct track *tg)
 /* Substitute a new load method that filters based on score. Also add
    a new itemColor() method that draws transfrags that overlap dups
    and pseudoGenes in a different color. */
 {
 tg->itemColor = affyTransfragColor;
 tg->loadItems = affyTransfragsLoad;
 }
 
-#define AFFY_PHASE2_FIX
-
 static Color affyTxnPhase2ItemColor(struct track *tg, void *item, struct hvGfx *hvg)
 /* Color for an affyTransfrag item. Different colors are returned depending
    on name. 
    0 - Passes all filters
    1 - Overlaps a pseudogene
    2 - Overlaps a blat hit
    3 - Overlaps both a pseudogene and a blat hit.
 */
 {
 static Color cleanCol = MG_WHITE;
 static Color blatCol = MG_WHITE;
 static Color pseudoCol = MG_WHITE;
 struct bed *bed = item;
 
 /* If first time through make the colors. */