4708a015402701842b39fbb8ed458e1bacc9092c
angie
Fri Dec 7 13:08:05 2012 -0800
Removing a bit of wasted vertical space in VCF ui controls.
diff --git src/hg/lib/vcfUi.c src/hg/lib/vcfUi.c
index b202065..e0c6f35 100644
--- src/hg/lib/vcfUi.c
+++ src/hg/lib/vcfUi.c
@@ -218,31 +218,30 @@
cgiMakeIntVarInRange(varName, cartHeight, "Height (in pixels) of track", 5, "4", "2500");
puts("
");
}
}
static void vcfCfgHapCluster(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,
char *name, boolean parentLevel)
/* Show controls for haplotype-sorting display, which only makes sense to do when
* the VCF file describes multiple genotypes. */
{
vcfCfgHapClusterEnable(cart, tdb, name, parentLevel);
vcfCfgHaplotypeCenter(cart, tdb, name, parentLevel, vcff, NULL, NULL, 0, "mainForm");
vcfCfgHapClusterColor(cart, tdb, name, parentLevel);
vcfCfgHapClusterTreeAngle(cart, tdb, name, parentLevel);
vcfCfgHapClusterHeight(cart, tdb, vcff, name, parentLevel);
-puts("
");
}
static void vcfCfgMinQual(struct cart *cart, struct trackDb *tdb, struct vcfFile *vcff,
char *name, boolean parentLevel)
/* If checkbox is checked, apply minimum value filter to QUAL column. */
{
char cartVar[1024];
safef(cartVar, sizeof(cartVar), "%s." VCF_APPLY_MIN_QUAL_VAR, name);
boolean applyFilter = cartUsualBooleanClosestToHome(cart, tdb, parentLevel,
VCF_APPLY_MIN_QUAL_VAR, VCF_DEFAULT_APPLY_MIN_QUAL);
cgiMakeCheckBox(cartVar, applyFilter);
printf("Exclude variants with Quality/confidence score (QUAL) score less than\n");
double minQual = cartUsualDoubleClosestToHome(cart, tdb, parentLevel, VCF_MIN_QUAL_VAR,
VCF_DEFAULT_MIN_QUAL);
safef(cartVar, sizeof(cartVar), "%s." VCF_MIN_QUAL_VAR, name);