3c80934048c85112e1a9701d64101a8de013fb74
rhead
  Wed Dec 5 20:07:26 2012 -0800
Changed check for existence of database to run on genome-mysql instead of using hgsql on the current host.  This was failing because the hgcentral table exists on genome-mysql but not on mysqlbeta or hgwdev.
diff --git src/utils/qa/checkGenomeMysql src/utils/qa/checkGenomeMysql
index e6b749d..dcf0992 100755
--- src/utils/qa/checkGenomeMysql
+++ src/utils/qa/checkGenomeMysql
@@ -16,31 +16,31 @@
 if [ $# -ne 1 ] 
 then
   echo -e "
 	checks genome-mysql servers for corrupted tables\n
 	Note: Due to the bash configurations in this 
 	script, if mysql encounters an error, the script
 	will immediately exit and will not check the 
 	rest of the tables in database. 
 	   usage: $(basename $0) database\n" >&2
   exit 1
 else
   db="$1"
 fi
 
 # make sure this is a valid database name
-if ! hgsql -Ne "show databases" | grep -qw $db
+if ! mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -Ne "show databases" | grep -qw $db
 then
   echo -e "\nERROR: database $db not found.\n" >&2
   exit 1
 fi
 
 tableList=$(mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -Ne "show tables" $db)
 
 # for each table in list do a select * limit 5.
 # Want to limit output or else the query would take forever. However,
 # can't do limit 1 since the first row of every table is stored in
 # the metadata and thus, mysql will not actually touch the table
 # if you do a select statement with a limit 1. Thus, we do a limit 5.
 # Throw away result of select statement and allow MySQL errors to be reported.
 # Also, genome-mysql is actually two hosts.  Check both.
 for table in $tableList