File Changes for kate
switch to commits view, user indexv278_preview2 to v278_base (2013-01-15 to 2013-01-22) v278
- src/hg/lib/trackDbCustom.c
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Add ENCODE track types to packable list. They've generally been used in track hierarchies where packability appeared as a side-effect.
- src/hg/makeDb/doc/encodeDccHg19/awgUniform.txt
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Adding step for linking md5sum files properly in downloads. Response to QA. #9850 ENCODE Uniform DNaseI HS
- src/hg/makeDb/trackDb/cv/alpha/cv.ra
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Allow comma separated list for DCC Accession. Added so that integrative analysis tracks that merge experiments can include the underlying experiments (without a lot of additional development for nested experiments or whatever). Used in #9850 ENCODE Uniform DNaseI HS.
- src/hg/makeDb/trackDb/human/hg19/haibTfbs.txt
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/.nfs000000001c22961e000002bd
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/acc.csh
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/acc.out
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/new.txt
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/test.csh
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAwgDnaseUniform.ra
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Add dccAccessions to metadata for merged experiments. #9850 ENCODE Uniform DNaseI HS
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Filling in missing second accession for UW+Duke Th1 dataset, but need to double-check this with AWG as the cell registration for this is not the same (Adult_CD4+_Th1, Th1)
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Updating mdb magic number
- src/hg/makeDb/trackDb/human/hg19/tfbsRanges.txt
- src/hg/makeDb/trackDb/human/hg19/viewLimits.txt
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseUniform.html
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Add explanation of Tier 2* designation in subtrack list. Response to QA. #9850: ENCODE Uniform DNaseI HS
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Advise on use of UCSC accession listed in metadata and File UI. #9850 ENCODE Uniform DNaseI HS
- src/hg/makeDb/trackDb/human/hg19/wgEncodeAwgDnaseUniform.ra
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Able to remove subtrack types and add narrowPeak at composite level if canPack setting is used to work-around incorrect visibility options problem. #9850 ENCODE Uniform DNaseI HS
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Restoring corrections lost in a previous reversion (short label length, signalFilter settings, Huh7.5 tablename
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Fix cell line coloring, in response to QA (Question 7). #9850 ENCODE Uniform DNaseI HS
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Tweak gray scale shading settings to better distinguish differing signal values which are not well distributed. #9850 ENCODE Uniform DNaseI HS
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Friendlier formatting of long subgroup.
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Removing treatment column from fileUi -- it's not very informative and doesn't sort well. The treatment is viewable in the Additional Details. Subject to veto by AQA... #9850 ENCODE Uniform DNaseI HS
- src/hg/makeDb/trackDb/human/hg19/wgEncodeRegDnaseClustered.release2.html
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Track description wordsmithing
- src/hg/makeDb/trackDb/tagTypes.tab
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Using scoreMax in #9850 ENCODE Uniform DNaseI HS, so adding to narrowPeak list. scoreMin already had this
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