284a175e985cde818c02a65aecb8524be9d9bb2a luvina Mon Jan 21 10:46:04 2013 -0800 added announcement for new baboon assembly papAnu2 diff --git src/hg/htdocs/indexNews.html src/hg/htdocs/indexNews.html index 4031fd2..a75e01c 100755 --- src/hg/htdocs/indexNews.html +++ src/hg/htdocs/indexNews.html @@ -13,179 +13,75 @@ SRC="images/news.jpg" ALT="" ALIGN="right" BORDER=0>

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+ + 22 January 2013 - + New Baboon (papAnu2) Assembly Now Available in the Genome Browser +

+ We are pleased to announce the release of a Genome Browser for the March 2012 + assembly of the Olive Baboon, Papio anubis (Baylor Panu_2.0, UCSC version papAnu2). + The whole genome shotgun assembly was provided by + The Baylor College of Medicine Human Genome Sequencing Center. + There are 72,500 scaffolds with a total size of 2,948,380,710 bases. +

+ +

+ Bulk downloads of the sequence and annotation data are available via the Genome Browser + FTP server + or the + Downloads + page. These data have + specific conditions for use. + The baboon (papAnu2) browser annotation tracks were generated by UCSC and collaborators + worldwide. See the + Credits + page for a detailed list of the organizations and individuals who contributed to this release. +

+ +
+ 15 January 2013 - New Lamprey (petMar2) Assembly Now Available in the Genome Browser

We are pleased to announce the release of a Genome Browser for the September 2010 assembly of the Lamprey, Petromyzon marinus (WUGSC 7.0, UCSC version petMar2). The whole genome shotgun assembly was provided by The Genome Institute at Washington University. There are 25,006 scaffolds with a total size of 885,550,958 bases.

Bulk downloads of the sequence and annotation data are available via the Genome Browser FTP server or the Downloads page. These data have specific conditions for use. The lamprey (petMar2) browser annotation tracks were generated by UCSC and collaborators worldwide. See the Credits page for a detailed list of the organizations and individuals who contributed to this release.

-
- - 20 December 2012 - - 28 New Vertebrate Assemblies! -

- Over the past several weeks, we have released 28 new vertebrate assemblies on the - public Genome Browser website, featuring 22 new species and 6 assembly updates. - These assemblies were added to support the 60-species Conservation track on the - latest mouse assembly (mm10/GRCm38). Several of these species were originally - sequenced and assembled for the Mammalian Genome Project (Lindblad-Toh - et al., Nature 2011)*. -

- Primates: -

    -
  • Baboon (Papio hamadryas) papHam1 – - Pham_1.0 (Nov. 2008) from the Baylor College of Medicine HGSC - -
  • Bushbaby (Otolemur garnettii) otoGar3 – - OtoGar3 (Mar. 2011) from the Broad Institute - -
  • Chimpanzee (Pan troglodytes) panTro4 – - Build 2.1.4 (Feb. 2011) from the Chimpanzee Genome Sequencing Consortium -
  • Gibbon (Nomascus leucogenys) nomLeu2 – - Nleu1.1 (Jun. 2011) from the Gibbon Genome Sequencing Consortium - -
  • Mouse lemur (Microcebus murinus) micMur1 – - MicMur1.0 (Jul. 2007) from the Broad Institute - -
  • Rhesus macaque (Macaca mulatta) rheMac3 – - CR_1.0 (Oct. 2010) from the Beijing Genomics Institute - -
  • Squirrel monkey (Saimiri boliviensis) - saiBol1 – SaiBol1.0 (Oct. 2011) from the Broad Institute - -
  • Tarsier (Tarsius syrichta) tarSyr1 – - Tarsyr1.0 (Aug. 2008) from WUSTL and the Broad Institute -
-

-

- Other mammals: -

    -
  • Alpaca (Vicugna pacos) vicPac1 – - VicPac1.0 (Jul. 2008) from the Broad Institute - -
  • Armadillo (Dasypus novemcinctus) dasNov3 – - DasNov3 (Dec. 2011) from the Broad Institute - -
  • Cat (Felis catus) felCat5 – - Felis_catus-6.2 (Sep. 2011) from the International Cat Genome Sequencing Consortium - -
  • Dolphin (Tursiops truncatus) turTru2 – - Ttru_1.4 (Oct. 2011) from the Baylor College of Medicine HGSC - -
  • Hedgehog (Erinaceus europaeus) eriEur1 – - Draft_v1 (Jun. 2006) from the Broad Institute - -
  • Kangaroo rat (Dipodomys ordii) dipOrd1 – - DipOrd1.0 (Jul. 2008) from Baylor College of Medicine HGSC and the Broad Institute - -
  • Manatee (Trichechus manatus latirostris) triMan1 – - TriManLat1.0 (Oct. 2011) from the Broad Institute - -
  • Megabat (Pteropus vampyrus) pteVam1 – - PteVap1.0 (Jul. 2008) from the Broad Institute - -
  • Naked mole rat (Heterocephalus glaber) hetGla2 – - HetGla_female_1.0 (Jan. 2012) from the Broad Institute - -
  • Pig (Sus scrofa) susScr3 – - Sscrofa10.2 (Aug. 2011) from the Swine Genome Sequencing Consortium - -
  • Pika (Ochotona princeps) ochPri2 – - OchPri2 (Jul. 2008) from the Broad Institute - -
  • Rock hyrax (Procavia capensis) proCap1 – - Procap1.0 (Jul. 2008) from the Baylor College of Medicine HGSC - -
  • Shrew (Sorex araneus) sorAra1 – - SorAra1.0 (Jun. 2006) from the Broad Institute - -
  • Sloth (Choloepus hoffmanni) choHof1 – - ChoHof1.0 (Jul. 2008) from the Broad Institute - -
  • Squirrel (Spermophilus tridecemlineatus) speTri2 – - SpeTri2.0 (Nov. 2011) from the Broad Institute - -
  • Tree shrew (Tupaia belangeri) tupBel1 – - Tupbel1.0 (Dec. 2006) from the Broad Institute -
-

-

- Other vertebrates: -

    -
  • Atlantic cod (Gadus morhua) gadMor1 – - GadMor_May2010 (May 2010) from Genofisk - -
  • Budgerigar (Melopsittacus undulatus) melUnd1 – - v6.3 (Sep. 2011) from WUSTL - -
  • Coelacanth (Latimeria chalumnae) latCha1 – - LatCha1 (Aug. 2011) from the Broad Institute - -
  • Nile tilapia (Oreochromis niloticus) oreNil2 – - OreNil1.1 (Jan. 2011) from the Broad Institute -
-

- Our sincere thanks to the many organizations who contributed to the release - of these datasets. We'd also like to acknowledge the Genome Browser - staff who worked on this release: Hiram Clawson, Chin Li, Brian Raney, - Brooke Rhead, Steve Heitner, Pauline Fujita, Luvina Guruvadoo, Greg Roe, and - Donna Karolchik. Please see the Genome Browser - credits page for complete acknowledgment - information and data use restrictions. All datasets may be downloaded from our - ftp server or - downloads page. -

-

- We regret that we don't have the resources to support the many other - genomics research communities who would like us to visualize their data - in our browser. However, we can provide you with information for setting up - your own browser or track hub to display your data, as well as links to - other visualization resources on the web that are specific to your - genome of interest. Feel free to contact our - mail list for more information. -

-

- *Lindblad-Toh K et al. - A high-resolution map of human evolutionary constraint using 29 - mammals. Nature. 2011 Oct 12;478(7370):476-82. -

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