c3fcdfd3c6db22e6c6ff0f6273a38eaf9b3fd4d6
rhead
  Thu Jan 17 11:15:12 2013 -0800
Removed references gdbPdb, as this table is no longer in use (RM #9803.)
diff --git src/utils/qa/checkMetaData.csh src/utils/qa/checkMetaData.csh
index d4e91f3..b055b3e 100755
--- src/utils/qa/checkMetaData.csh
+++ src/utils/qa/checkMetaData.csh
@@ -1,30 +1,30 @@
 #!/bin/tcsh
 source `which qaConfig.csh`
 
 ###############################################
 # 
 #  08-25-04
 #  Robert Kuhn
 # 
 #  checks the metadata for a new assembly.
 # 
 ###############################################
 
 set db=""
 set dbTrunc=""
-set metatables="dbDb blatServers defaultDb gdbPdb genomeClade liftOverChain"
+set metatables="dbDb blatServers defaultDb genomeClade liftOverChain"
 
 if ( $#argv < 1 || $#argv > 3 ) then
   # no command line args
   echo
   echo "  checks the metadata for a new assembly."
   echo
   echo "    usage:  database [machine1 machine2]"
   echo '        (defaults to dev and beta, or use "RR".)'
   echo
   exit
 else
   set db=$argv[1]
   set dbTrunc=`echo $db | sed -e "s/[0-9]*//"`
 endif
 
@@ -153,39 +153,30 @@
 hgsql $host1 -Ne 'SELECT * FROM blatServers WHERE db = "'$db'"' $centdb1 | sort \
   > $metatable.$db.$out1 
 hgsql $host2 -Ne 'SELECT * FROM blatServers WHERE db = "'$db'"' $centdb2 | sort \
   > $metatable.$db.$out2 
 
 
 # check defaultDb 
 set metatable="defaultDb"
 
 hgsql $host1 -Ne 'SELECT * FROM defaultDb WHERE name LIKE "'$dbTrunc'%"' \
    $centdb1 > $metatable.$db.$out1 
 hgsql $host2 -Ne 'SELECT * FROM defaultDb WHERE name LIKE "'$dbTrunc'%"' \
    $centdb2 > $metatable.$db.$out2 
 
 
-# check gdbPdb
-set metatable="gdbPdb"
-
-hgsql $host1 -Ne 'SELECT * FROM gdbPdb WHERE genomeDb = "'$db'"' $centdb1 \
-  > $metatable.$db.$out1 
-hgsql $host2 -Ne 'SELECT * FROM gdbPdb WHERE genomeDb = "'$db'"' $centdb2 \
-  > $metatable.$db.$out2 
-
-
 # check liftOverChain
 set metatable="liftOverChain"
 
 hgsql $host1 -Ne 'SELECT * FROM liftOverChain WHERE fromDb = "'$db'" \
   or toDb = "'$db'"' $centdb1 | sort \
   > $metatable.$db.$out1
 hgsql $host2 -Ne 'SELECT * FROM liftOverChain WHERE fromDb = "'$db'" \
   or toDb = "'$db'"' $centdb2 | sort \
   > $metatable.$db.$out2
 
 
 # check genomeClade
 # get genome name for the assembly to query genomeClade table.
 
 set genome=`hgsql -N -e 'SELECT genome FROM dbDb WHERE name = "'$db'"' \
