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To receive announcements of new genome
assembly releases, new software features, updates and
training seminars by email, subscribe to the
genome-announce mailing list.
+ 15 January 2013 -
+ New Lamprey (petMar2) Assembly Now Available in the Genome Browser
+
+ We are pleased to announce the release of a Genome Browser for the September 2010
+ assembly of the Lamprey, Petromyzon marinus (WUGSC 7.0, UCSC version petMar2).
+ The whole genome shotgun assembly was provided by
+ The Genome Institute at Washington University.
+ There are 25,006 scaffolds with a total size of 885,550,958 bases.
+
+
+
+ Bulk downloads of the sequence and annotation data are available via the Genome Browser
+ FTP server
+ or the
+ Downloads
+ page. These data have
+ specific conditions for use.
+ The lamprey (petMar2) browser annotation tracks were generated by UCSC and collaborators
+ worldwide. See the
+ Credits
+ page for a detailed list of the organizations and individuals who contributed to this release.
+
+
+
+
20 December 2012 -
28 New Vertebrate Assemblies!
Over the past several weeks, we have released 28 new vertebrate assemblies on the
public Genome Browser website, featuring 22 new species and 6 assembly updates.
These assemblies were added to support the 60-species Conservation track on the
latest mouse assembly (mm10/GRCm38). Several of these species were originally
sequenced and assembled for the Mammalian Genome Project (Lindblad-Toh
et al., Nature 2011)*.
Primates:
- Baboon (Papio hamadryas) papHam1 –
Pham_1.0 (Nov. 2008) from the Baylor College of Medicine HGSC
@@ -143,55 +169,23 @@
We regret that we don't have the resources to support the many other
genomics research communities who would like us to visualize their data
in our browser. However, we can provide you with information for setting up
your own browser or track hub to display your data, as well as links to
other visualization resources on the web that are specific to your
genome of interest. Feel free to contact our
mail list for more information.
*Lindblad-Toh K et al.
A high-resolution map of human evolutionary constraint using 29
mammals. Nature. 2011 Oct 12;478(7370):476-82.
-
-
-
- 14 December 2012 -
- Reduced Coverage During the Holidays
-
- The UCSC campus will be closed for the holidays from December 22, 2012 through
- January 1, 2013. The Genome Browser will still be available;
- however, our backup systems will be offline for two days, December 27 and 28.
- During this time if we experience any issues, associated fixes are likely to be
- delayed. The help desk will also be minimally staffed during this period. We will
- be monitoring the mailing lists for urgent messages, but the bulk of the questions
- will go unanswered until early January.
-
-
- 07 December 2012 -
- dbSNP 137 Available for hg19:
- We are pleased to announce the release of four tracks derived
- from dbSNP build 137, available on the human assembly (GRCh37/hg19).
- dbSNP build 137 is available at NCBI. The new tracks contain
- additional annotation data not included in previous dbSNP tracks,
- with corresponding coloring and filtering options in the Genome
- Browser.
- Read more.
-
-
- 27 November 2012 -
- New UCSC Genes Track Released for Mouse:
- We're happy to announce the release of a new UCSC Genes
- track for the GRCm38/mm10 mouse Genome Browser.
- Read more.
-
==> News Archives
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