Commits for braney

v277_base to v278_preview (2012-12-18 to 2013-01-08) v278

• clean up error handling a little in support of #3130. Made failure to open seq file equivalent to other errors finding sequence in the database. This should change nothing if the seq is found, and should only change the error message if the file mentioned in extFile is not found, in which case the error will be something like "can't find sequence blatDeBlah" instead of "External file /gbdb/genbank/./data/processed/refseq.46/full/mrna.fa cannot be opened or has wrong size." Codon and base translation in hgTracks will fail silently and default to the standard display if the sequence is not available.
  • src/hg/lib/hdb.c - lines changed 38, context: html, text, full: html, text
• temporarily disabling spDbTest until I figure out how it should work with the most recent uniProt database.
  • src/hg/lib/tests/makefile - lines changed 1, context: html, text, full: html, text
• add back spDbTest with database that exists
  • src/hg/lib/tests/expected/spDbTest - lines changed 170, context: html, text, full: html, text
  • src/hg/lib/tests/makefile - lines changed 3, context: html, text, full: html, text
• est.new.html should have been added months (years?) ago.
  • src/hg/makeDb/trackDb/est.new.html - lines changed 133, context: html, text, full: html, text